Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1792 ATGGCCTTCGATCACCAAAACGGCGCCGCCGCGGCCTTGGACGTTTGCGGTGGCAACGGCAACGGCCACGTCCAATGGGACCCACTTAACTGGGGGGCCGCGGCGGAGGCGATGAAGGGCAGCCATTTGGATGAGGTAAAGCGGATGGTGGAGGAGTATCGGAAGCCACTCGTTCGGCTTGGTGGTGAGAGTCTAACGATAGCACAAGTCGCTGCCATTGCTAGTGGCACCAGCAGTAATGTCACGGTGGAGTTGGCAGAGGAGAGTCGGGCTCAAGTCAAGGCCAGCAGCGATTGGGTGATGGAGAGTATGAATAAGGGTACGGATAGTTACGGTGTCACAACTGGTTTTGGTGCAACGTCGCATAGAAGAACAAAACAAGGTGGAGCCCTTCAAAGAGAACTTATTAGGTTCTTGAATGCTGGAATCTTTGGCAATGACACAGAATGTTCCCATAAATTGTCATCGTCAGCGACGAGAGCTGCCATGTTGGTGAGGATCAACACCCTTTTACAAGGTTATTCTGGTATTAGGTTCGAGATCTTGGAAGCCATAGCCAAGTTTCTAAACCATAATATTACTCCATGCTTGCCTCTGCGGGGCACCATAACTGCTTCTGGTGATTTGGTTCCTCTTTCATATATTGCTGGGCTTTTGATCGGTAGACCCAATTCCAAGGCTGTTGGGCCAAATGGAGAGTTTATTAACTCATCTGAGGCGTTTCAATTAGCTGAGATTGATAGTGGGTTTTTTGAGTTGCAACCCAAAGAGGGTCTTGCTCTAGTGAATGGCACTGCTGTTGGATCTGGTTTGGCTTCTATGGTGCTTTTTGAAGCCAACATTTTAGCAGTTTTTTCTGAAATCTTGTCGGCAATCTTTGCTGAAGTTATGCAAGGAAAACCTGAATTTACCGATCACTTGACACATAAATTAAAGCATCATCCTGGCCAGATTGAAGCAGCAGCTATAATGGAGCATATATTGGATGGAAGCTCTTATGTAAAATCGACTAAAAAATTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCACAGTGGCTTGGGCCACAAATTGAAGTCATTCGGGCCGCAACGAAGACGATTGAGAGGGAAATAAACTCGGTGAATGACAACCCCTTGATTGATGTTTCGAGAAACAAGGCTTTACACGGAGGAAATTTTCAAGGCACACCAATTGGTGTCTCTATGGATAACACTAGACTAGCCATTGCTTCCATTGGCAAGCTTATGTTTGCTCAATTTTCAGAGCTTGTCAACGATTTTTATAACAATGGGTTGCCTTCCAATCTTTCTGCAAGCCGCAATCCCAGTTTGGATTATGGTTTCAAAGGAGCTGAAATTGCTATGGCATCGTACTGCTCAGAACTGCAATTCTTAGCCAATCCAGTCACCAACCATGTCCAGAGTGCAGAGCAACACAATCAAGATGTGAACTCTTTAGGGTTGATTTCCTCAAGAAAAACAGAAGAGGCAGTTGAGATATTAAAGTTGATGTCTACTACTTTCTTGGTAGCCCTCTGTCAAGCTATTGATTTGAGGCACTTAGAGGAGAATTTGAAGAGTACAGTGAAGAACACAATTAGTCAAGTGGCCAAGAAAGTACTACTCATGGACTATAATGGAGAGCTTCACCCAATTCGATTCAGTGAAAAAAATTTGCTTCAAGTGGTCGATAGAGAGCATGTTTTCACCTACATTGATGACCCTTGCAGTGCTACCTATCCATTGATGCAAAAGTTAAGACAAGTCCTAGTAGAGCATGCTTTAAACAATGGTGAGAGAGAGGAAAACCCCGGGAGTTCAATTTTCCACAAGATAGGGACATTTGAGGAAGAATTGAAGACCCTCCTACCAAAAGAAGTAGAAAATTCAAGAATTGAATTTGAGAGTGAAAATTCAACGATTCCAAACCAAATCAAACAATGCAGGTCCTACCCATTATACAAATTTGTTAGGGAAACATTGGGGACCAGTTTATTAACAGGTGAGAGAGTCAAATCCCCCGGTGAAGAATTCGATAAGGTTTTCTCAGCCATTTGTGCTGGAAAGTTGATTGATCCAATGTTAGAATGCTTGAAAGGATGGAACGGTGCTCCCCTCCCTATTAACTAA 2160 43.98 MAFDHQNGAAAALDVCGGNGNGHVQWDPLNWGAAAEAMKGSHLDEVKRMVEEYRKPLVRLGGESLTIAQVAAIASGTSSNVTVELAEESRAQVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNDTECSHKLSSSATRAAMLVRINTLLQGYSGIRFEILEAIAKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGEFINSSEAFQLAEIDSGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVFSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSTKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKTIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLLMDYNGELHPIRFSEKNLLQVVDREHVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEREENPGSSIFHKIGTFEEELKTLLPKEVENSRIEFESENSTIPNQIKQCRSYPLYKFVRETLGTSLLTGERVKSPGEEFDKVFSAICAGKLIDPMLECLKGWNGAPLPIN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19796163 19800166 + MC09g_new0419 Mch9g1792 698674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1792 719 Gene3D - 532 653 IPR023144 -
Mch9g1792 719 Gene3D - 19 265 IPR024083 -
Mch9g1792 719 FunFam Phenylalanine ammonia-lyase 266 549 - -
Mch9g1792 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Mch9g1792 719 FunFam Phenylalanine ammonia-lyase 19 265 - -
Mch9g1792 719 CDD PAL-HAL 63 529 IPR001106 -
Mch9g1792 719 NCBIfam phenylalanine ammonia-lyase 27 709 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Mch9g1792 719 PANTHER HISTIDINE AMMONIA-LYASE 23 718 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch9g1792 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
Mch9g1792 719 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824(InterPro)
Mch9g1792 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841(InterPro)
Mch9g1792 719 Pfam Aromatic amino acid lyase 65 544 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0821 Mch-Chr1:11743346 Mch9g1792 Mch-Chr9:19796163 0 dispersed
Mch1g0822 Mch-Chr1:11748874 Mch9g1792 Mch-Chr9:19796163 0 dispersed
Mch5g1064 Mch-Chr5:8651912 Mch9g1792 Mch-Chr9:19796163 1.64E-55 dispersed
Mch5g1065 Mch-Chr5:8653830 Mch9g1792 Mch-Chr9:19796163 2.84E-38 dispersed
Mch6g0950 Mch-Chr6:6730339 Mch9g1792 Mch-Chr9:19796163 1.45E-280 dispersed
Mch1g0817 Mch-Chr1:11724681 Mch9g1792 Mch-Chr9:19796163 0 wgd
Mch2g0341 Mch-Chr2:2518239 Mch9g1792 Mch-Chr9:19796163 3.14E-237 wgd
Mch4g2047 Mch-Chr4:22712733 Mch9g1792 Mch-Chr9:19796163 3.76E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1792 K10775 - rcu:8273543 1192.18