Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1807 GATCGGTCAGCCATCGACGCCTTACTGGTGAAACTGGTAAGTGGATCTCCAGAGCAGAAAAGATCGGCTGCTGGTGAGCTCCGGTTACTAGCGAAGAGGAATTCTGATAACAGAATCTGTATTGCCGAGGCAGGAGCCATTCCGTTCCTTGTCGAGCTATTGTCCTCGGACGATACTAGAACTCAGGAGCATGCAGTTACAGCATTATTGAATCTTTCAATCAATGACAGCAATAAAAGAACGATCGTTGATTTACGAGCTATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAGAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGATGAGAACAAGGTCGCGATTGGGGCAGCCGGGGCAATCCCTGCTCTTATAAGTTTACTTTGTGAGGGAACTCCCAGAGGAAAGAAGGATGCAGCCACTGCTATTTTCAATCTTTCAATTTACCAAGGAAACAAAGCAAGGGCAGTAAGAGCAGGCATTGTGGCACCACTTATGAGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATTAGGCAAGCCGAGCCGATGACGGTTCTATTAGAGTTCATAAGAACTGGTTCTCCACGCAACCGGGAAAACGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACCGATATGGAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAGGAAGTATCAGAGAATGGCACAGATAGAGCCAAGAGAAAAGCAGGAAGCATTCTAGAGCTCTTCCAA 837 47.55 DRSAIDALLVKLVSGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSDDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVAPLMRFLKDAGGGMVDEALAILAILATHHEGKMGIRQAEPMTVLLEFIRTGSPRNRENAAAVLWSLCSTDMEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQ 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19881471 19882307 + MC09g1381 Mch9g1807 698689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1807 279 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 86 128 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 Gene3D - 182 279 IPR011989 -
Mch9g1807 279 SMART arm_5 34 74 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 SMART arm_5 75 115 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 SMART arm_5 198 238 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 SMART arm_5 116 156 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 SMART arm_5 157 197 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 SUPERFAMILY ARM repeat 4 275 IPR016024 -
Mch9g1807 279 PANTHER U BOX DOMAIN-CONTAINING 2 278 - -
Mch9g1807 279 Pfam Armadillo/beta-catenin-like repeat 75 114 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 Pfam Armadillo/beta-catenin-like repeat 117 155 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 Pfam Armadillo/beta-catenin-like repeat 34 73 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 Gene3D - 1 78 IPR011989 -
Mch9g1807 279 FunFam RING-type E3 ubiquitin transferase 1 279 - -
Mch9g1807 279 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 87 IPR000225 GO:0005515(InterPro)
Mch9g1807 279 Gene3D - 79 181 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1807 Mch-Chr9:19881471 Mch2g1291 Mch-Chr2:9063766 1.40E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1807 K27628 - csv:101221065 481.485