Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1816 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGTTCGGTCTTTAATGTCGCCTCTGCTTCTTTCAATCTTACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAGAGGAGAGTCAATGCGTCCATATCGAGAAGACAAATGCTATCCCTGGAATCCAAGGATGAAGCTTTCTCCTGCCTCTCCGGCAACCCGATCGACGACTGCTGGCGGTGCGACCCGAATTGGGCAGCTAACCGGCAGAGACTCGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCGTCGGCGGCAAAGGCGGCAAGATCTACATCGTCAGCGACTCGTCCGATTCCGATCCGGCGAACCCAACTCCGGGCACCCTCCGCCACGCCGTCATCCAATTCGAACCCCTGTGGATAATCTTCTCCGCCGACATGACCATAAGGCTCAAATACGAACTCATCGTGAATAGCTTCAAAACCATCGACGGCCGCGGCGCCAACGTCCACATCACCGGCGGCGGCTGCATCACCATCCAATACGTCTCCAATATCATCATCCACAACATCCACGTCCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACTCCAACCCACGTGGGACATCGGGGGTTGTCAGACGGGGATGGGATCTCGATCTTCAGCTCTCGAAAGATCTGGATCGACCACTGCTCGCTATCGTATTGCACAGATGGGTTGATCGACGCGATAATGGGATCGACGGGGATAACGATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGTTACTAGGGCACGACGACCGGTATGTCCAGGACTCCGGGATGCAGGTCACCATAGCGTTTAACCATTTCGGCGAGGCATTGGTGCAGCGGATGCCACGCTGCAGGCATGGCTACATCCACGTCGTCAACAACGACTTCACGGCTTGGGAAATGTACGCCATCGGCGGCAGCGCCCGCCCCACCATTAACAGCCAGGGAAACCGCTACACTGCTCCTCTCGACCCCAATGCCAAGGAGGTGACGAGACGTTTGGACGCCGCGGAGACGGATTGGTCGGCGTGGAATTGGCGGACGGACGGCGATATTTTGGTGAACGGCGCGTTTTTCGTGCCGTCCGGCGCCGGAGTCAGCACCCAGTACGGCAAAGCTTCCAGCGTGGAGCCCAAATCCGTCGCTCTTATCAATCAGCTCACCATGAACGCCGGCGTTCTCGCCGCCCCCAGGTATAATAGCGGTCAAGGCATTGTATATCCAGGATTTAGTGGTAACAATGATGGCAGTGGCATTGGTGAATATGGTGGGAACACCGTCATAAATAACAGTCCAATAGGTGGAAATGGTGGAGGTGGTGAAGATGACTTCTACGGAATGATATTTAAAGCTGGTGGTTACAGAGTATCGTCCTTGCCACCATTGTCAATAAACTTATGGATACAAATTGTAATAATTTTGTATATAGTTATGAATTATTGTGGTCTATTCACTTTATAG 1512 53.51 MFPVLSILLIWMSGSVFNVASASFNLTLPHQHPDPDSVADELQRRVNASISRRQMLSLESKDEAFSCLSGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAVGGKGGKIYIVSDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTIRLKYELIVNSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPLDPNAKEVTRRLDAAETDWSAWNWRTDGDILVNGAFFVPSGAGVSTQYGKASSVEPKSVALINQLTMNAGVLAAPRYNSGQGIVYPGFSGNNDGSGIGEYGGNTVINNSPIGGNGGGGEDDFYGMIFKAGGYRVSSLPPLSINLWIQIVIILYIVMNYCGLFTL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19952755 19958911 - MC09g1389 Mch9g1816 698698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1816 503 PANTHER PECTATE LYASE 18-RELATED 20 413 IPR045032 GO:0030570(InterPro)
Mch9g1816 503 FunFam Pectate lyase 70 412 - -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Mch9g1816 503 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Mch9g1816 503 SMART amb_all 145 342 IPR002022 -
Mch9g1816 503 SUPERFAMILY Pectin lyase-like 71 410 IPR011050 -
Mch9g1816 503 Gene3D - 70 412 IPR012334 -
Mch9g1816 503 Pfam Pectate lyase 154 331 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0067 Mch-Chr8:378620 Mch9g1816 Mch-Chr9:19952755 1.32E-175 dispersed
Mch8g2008 Mch-Chr8:22357645 Mch9g1816 Mch-Chr9:19952755 1.30E-142 dispersed
Mch9g1816 Mch-Chr9:19952755 Mch9g2162 Mch-Chr9:22307006 1.76E-144 dispersed
Mch1g0756 Mch-Chr1:11352601 Mch9g1816 Mch-Chr9:19952755 1.83E-47 transposed
Mch1g0854 Mch-Chr1:11940801 Mch9g1816 Mch-Chr9:19952755 1.03E-221 wgd
Mch4g2019 Mch-Chr4:22498721 Mch9g1816 Mch-Chr9:19952755 3.65E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1816 K01728 - csv:101205739 864.759