Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1831 ATGAACTGTCTTCAAAACCTTTCACTATCATCTACTTTGCCTCTGCGAAGCTTCAAATGCCGGAAGATAAAGCCTGAATTCCAGCTCTGCAAACTGGTAATGAGGAATTTTACCGATCTACATCGCCGTTCTCTTGTGAAGGCAGTACCTGGCTCTACATCAAATGCCGAAATGAGTGGCGCTGAGGTGAATGATGCTGAGGAAAAGGAGGAAAAATCTGAGATATATAGTCATAACATGACAGAAGCCATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTTCGCAGCATTGGAGTAAGAACAATTTTCTGCCTGCAGCAAGATCCAGATTTGGAATATTTTGGAGTTGACATTGGTGCCATAATAGCATATTCAAAGACGTATGATGATATTGAACATTTGCGTGCTCAAATAAGGGATTTTGATGCACACGATCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCCATTAACCGAAATGGTGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCATATATGTTCTGGGTTCAAGGCTACGGACTCCATGAGGCTATAGAACTACTGCTGAGCAAACGCTCATGCTTCCCCAAAATAGATGCTATTAAAAGTGCAACTGCTGATATTCTTTCAGGATTTCGAAAGAAGCTTGTCACTTTATCGTGGAAAAATGACCAATGCTCAACTGTAGAAGTATCTGGACTTGACATTGGATGGGGCCAGAGGATTCCATTAAAATTCAACGAGGAACGAGGTGCATGGATTCTCAACAGAGAACTGCCGGAAGGGCGATATGAATACAAGTACATCATTGATGGTGTATGGACATGCAATGAAGCTGAGCTCGTCACTCCTCCCAACCAAGATGGCCACGTCAACAATTTCATTCAAGTTGTTGATGATGATCCAAGCAGTGAAAGAGCAATTCTTCGGGGGAGGTTAAATGGAGATGAACCAGAGCTCACGGCCGAAGAAAGAAGCAAAATAAGACAATTTCTTGAAGCTTATCCAGATGAAAATTGA 1140 42.28 MNCLQNLSLSSTLPLRSFKCRKIKPEFQLCKLVMRNFTDLHRRSLVKAVPGSTSNAEMSGAEVNDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTIFCLQQDPDLEYFGVDIGAIIAYSKTYDDIEHLRAQIRDFDAHDLRLRLPAVVSKLHKAINRNGGVTYIHCTAGLGRAPAVAMAYMFWVQGYGLHEAIELLLSKRSCFPKIDAIKSATADILSGFRKKLVTLSWKNDQCSTVEVSGLDIGWGQRIPLKFNEERGAWILNRELPEGRYEYKYIIDGVWTCNEAELVTPPNQDGHVNNFIQVVDDDPSSERAILRGRLNGDEPELTAEERSKIRQFLEAYPDEN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20091929 20100740 - MC09g1402 Mch9g1831 698713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1831 379 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 232 IPR000387 GO:0016311(InterPro)
Mch9g1831 379 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470(InterPro)
Mch9g1831 379 MobiDBLite consensus disorder prediction 51 72 - -
Mch9g1831 379 Gene3D Protein tyrosine phosphatase superfamily 90 371 IPR029021 -
Mch9g1831 379 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203(InterPro)
Mch9g1831 379 Pfam Glycogen recognition site of AMP-activated protein kinase 257 341 IPR032640 -
Mch9g1831 379 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 378 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Mch9g1831 379 Gene3D Immunoglobulins 252 343 IPR013783 -
Mch9g1831 379 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 90 272 - -
Mch9g1831 379 SUPERFAMILY E set domains 255 338 IPR014756 -
Mch9g1831 379 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 239 IPR029021 -
Mch9g1831 379 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 252 342 - -
Mch9g1831 379 CDD E_set_AMPKbeta_like_N 257 337 - -
Mch9g1831 379 Pfam Dual specificity phosphatase, catalytic domain 152 235 IPR000340 GO:0016311(InterPro)
Mch9g1831 379 SMART dsp_5 97 247 IPR020422 GO:0006470(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1831 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1401 Mch-Chr9:16441404 Mch9g1831 Mch-Chr9:20091929 1.13E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37