Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1889 CATTTTCTTCTGACACACACTTTATTTTTCCACTCCTTCCTTCTTCTCCCGCCTCTATATAAGTCCTCTCTCCTTCTTCACTCACCGAGTCACTCCCGAGTTGAAAATCACGTTATGAACTCACTTCCCTACATTTTTCTTCTCCTTCTCTCCCTCCGCCTCGCCGGAGCTTCCGATTCTCCTCCGCCTTCCGCCGCGCTCTGTAAAACCACTCTCTACCCTAAGCTCTGCCATTCGATTCTCTCCTCCATCCGATTCTCGCCCTCCGATCCCTACGGCTACGGAAAATTCTCCGTCAAACAGTGTCTGAAGCAGGCGATCAAAATGTCGAGCGTAATCGGCGGCTACCTTCGCCGTGGAGGCGGTTCGAGGCTGAATCAGCGGGAGGCCGGCGCGCTCGACGACTGCAGAGAGCTCGCCGATTTGAATGTGGAGTTTCTGCGGTCGATTGAGAGCGTATTGGAGGCGGCGGAGGGCGTGGATGAGCAAGTGGTGGAGCGCGTCGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACGTGTATCGACGGATTGGTGGAATCGAAGAGCAGTTTGGGGAGTGCGCTATCGGCGCCGCTGTCGACTGCCGGGGAACTGTACAGCGTGTCGTTGGGATTGGTTAAGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGCGGCAGAGTTTTCCGGGCGGCGGAGGGAACAGAGAGCCACTGATCACGCTGATCAAGGGACTGCGAAAAATGGGGTCCTGCAACCAATCCACAATCTGCTCAGGAAGGGAGCGTTTGTTAACTGATTTAGGCACCACTGGAATTTTCATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGTGATGCAATTGCATTTTCTCCCAACAATTCTATGCCTGAAGATGGTTACTTTGTTATATATGTTAGAGAAGGATACTATGAAGAGTACGTCGTCGTCCCCAAATACAAAACCAACATAATGCTCATCGGAGATGGCATTAACCGAACAGTGATCACTGGAAACCACAGCGTCGTCGATGGTTGGACGACTTATAATTCTTCTACCTTTACTGTTTGTGGGGATGGATTTGTTGCAATAGACGTGACATTTAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTGGCAGTGAGGAACAGTGCAGATCTCTCAACATTCTACCGCTGCAGCTTTGAAGGCTATCAAGACACTCTCTATGTGCATTCCTTCCGACAATTCTACAGAGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGCAATGCCGCTGCGGTTTTCCAGCAATGCAACCTCTATGCCAGAAAGCCCCTACCGAACCAAAAGAATGCCTTCACAGCGCAGGGTCGAACCGATCCGAACCAAAGCACAGGCATCTCAATCCACAACTGCACGATCAGAGCTGCACCCGACTGGGCAATGGACTCGAACGCGACGATAGCGAACTACCTCGGGCGGCCATGGAAGCAGTACTCAAGGACAGTGTACATGCAGTCATACATTGGGGATTTGATCAGCCCTGTGGGATGGCTGGAGTGGAATGGAACAGCAGGGCTGGAGACATTGTATTATGGGGAGTTTGAGAATCATGGGCCAGGAGCAAACACAAGTATGAGGGTGAATTGGCCTGGCTATAGCTTGATGAATGCTACACAGGCCATGAATTTTACTGTCTATAACTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATCCCCTTCAATGGAGGTCTGGTATGA 1785 51.04 HFLLTHTLFFHSFLLLPPLYKSSLLLHSPSHSRVENHVMNSLPYIFLLLLSLRLAGASDSPPPSAALCKTTLYPKLCHSILSSIRFSPSDPYGYGKFSVKQCLKQAIKMSSVIGGYLRRGGGSRLNQREAGALDDCRELADLNVEFLRSIESVLEAAEGVDEQVVERVESILSAIVTNGQTCIDGLVESKSSLGSALSAPLSTAGELYSVSLGLVKNSLSRRWKKRRQSFPGGGGNREPLITLIKGLRKMGSCNQSTICSGRERLLTDLGTTGIFINNTVVVSSTGADNFTSIGDAIAFSPNNSMPEDGYFVIYVREGYYEEYVVVPKYKTNIMLIGDGINRTVITGNHSVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSFRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQSTGISIHNCTIRAAPDWAMDSNATIANYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTAGLETLYYGEFENHGPGANTSMRVNWPGYSLMNATQAMNFTVYNFTMGDTWLPYTDIPFNGGLV 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20525372 20532840 - MC09g1456 Mch9g1889 698771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1889 594 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Mch9g1889 594 Pfam Pectinesterase 280 579 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch9g1889 594 CDD PMEI-like_3 66 217 - -
Mch9g1889 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 218 IPR035513 -
Mch9g1889 594 SMART PMEI_2 59 214 IPR006501 GO:0004857(InterPro)
Mch9g1889 594 Gene3D - 274 593 IPR012334 -
Mch9g1889 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 217 IPR035513 -
Mch9g1889 594 PANTHER PECTINESTERASE 54 583 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch9g1889 594 FunFam Pectinesterase 274 593 - -
Mch9g1889 594 SUPERFAMILY Pectin lyase-like 275 591 IPR011050 -
Mch9g1889 594 Pfam Plant invertase/pectin methylesterase inhibitor 66 212 IPR006501 GO:0004857(InterPro)
Mch9g1889 594 NCBIfam pectinesterase inhibitor domain 44 193 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1445 Mch-Chr2:10680067 Mch9g1889 Mch-Chr9:20525372 1.08E-142 dispersed
Mch9g0697 Mch-Chr9:5247033 Mch9g1889 Mch-Chr9:20525372 1.72E-144 dispersed
Mch9g1889 Mch-Chr9:20525372 Mch9g0696 Mch-Chr9:5226477 5.95E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1889 K01051 - csv:101206112 978.778