Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1891 TCTCCCTCTGTTTCTACTTCCTCCTCCTCCTCCTCCTCCTGCGTCGGCGGCGGCGGCTTCGACAGCAATAATCTCAATCTCGCCGCCCCTCCGCGCCGGCCGCAATCGGAGAAGACCGGAGCGAAACGCCGGAAGCGGAATCAGGACGACGCCAAATGCGAGATTGAGAATCGTAACGGTAATAACAACAACAGCAGCAACAACAATGCCTCTTCCGGCCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCGCATCTCTGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGGAGCATACGATAACGAGGAAGCTGCCGCCCGAACTTATGACCTCGCTGCCCTCAAGTACTGGGGTCCCGGAACCACCCTCAATTTCCCGGTAGAGTCGTACAGGAATGAAATAGAAGAAATGCGGAAAGTTACGAAGGAGGAGTATTTGGCGTCGTTACGGCGGCGGAGCAGCGGATTTTCGAGAGGCGTATCGAAGTACCGCGGCGTGGCCCGCCACCACCACAACGGCCGGTGGGAGGCGCGGATCGGCCGTGTTTTCGGAAGCAAATATCTTTACCTGGGAACTTACAACACACAAGAGGAAGCAGCAGCAGCATATGACATGGCTGCAATTGAGTACAGAGGGGTCAATGCAGTGACCAATTTCGACATCAGCAATTACATTGGGCGGCTGGAGAATAAATCATCAGTTTTTCCAGCAGCAGAGCAGCCCCTACAGCCCAACTGCTCCCCTGCTTCCTCTTCTGAGGAAGGCGAAGTAGTACAGCAGCAACAGCAACAGACGACGATGGCGTTCTCAGGCTCGCCCCTCCAGTTCCCGTCGATGGAGAACAGCCCGACGACAATGGAGGAGGATCATGATCTGCATTGGTCATTCCTAGACACGGGGTTCGTGCAGGTCCCCGACCTCCCCCTCGAGAAGTCTGGCGAATTGCCTGACCTGTTCTTTGATGAGATCGGGTTCGAGGACGACATCGGGTTGATATTCGAGGCGAGCTTGGAAGACGAGAGGTGCGGGGAGGGGGGTGAGAAGTTAGAAGATGTGGGGAAAATGGAGATGATGAAGAGTGATCATGAGGAGAGGGGGTTGTTCTCGACTACTTCGCCATCTTCGTCGTCGATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1212 54.95 SPSVSTSSSSSSSCVGGGGFDSNNLNLAAPPRRPQSEKTGAKRRKRNQDDAKCEIENRNGNNNNSSNNNASSGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYRNEIEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGVNAVTNFDISNYIGRLENKSSVFPAAEQPLQPNCSPASSSEEGEVVQQQQQQTTMAFSGSPLQFPSMENSPTTMEEDHDLHWSFLDTGFVQVPDLPLEKSGELPDLFFDEIGFEDDIGLIFEASLEDERCGEGGEKLEDVGKMEMMKSDHEERGLFSTTSPSSSSITTSVSCEFRV 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20537313 20541066 - MC09g1457 Mch9g1891 698773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1891 403 MobiDBLite consensus disorder prediction 41 56 - -
Mch9g1891 403 MobiDBLite consensus disorder prediction 57 77 - -
Mch9g1891 403 CDD AP2 77 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 PRINTS Ethylene responsive element binding protein signature 217 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 SUPERFAMILY DNA-binding domain 77 143 IPR016177 GO:0003677(InterPro)
Mch9g1891 403 MobiDBLite consensus disorder prediction 375 403 - -
Mch9g1891 403 SUPERFAMILY DNA-binding domain 176 237 IPR016177 GO:0003677(InterPro)
Mch9g1891 403 ProSiteProfiles AP2/ERF domain profile. 177 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 FunFam AP2-like ethylene-responsive transcription factor 176 237 - -
Mch9g1891 403 MobiDBLite consensus disorder prediction 1 20 - -
Mch9g1891 403 Gene3D AP2/ERF domain 176 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 Gene3D AP2/ERF domain 78 143 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 CDD AP2 176 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 MobiDBLite consensus disorder prediction 1 77 - -
Mch9g1891 403 FunFam AP2-like ethylene-responsive transcription factor 77 143 - -
Mch9g1891 403 MobiDBLite consensus disorder prediction 382 403 - -
Mch9g1891 403 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 278 - -
Mch9g1891 403 Pfam AP2 domain 176 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 ProSiteProfiles AP2/ERF domain profile. 78 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 SMART rav1_2 78 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1891 403 SMART rav1_2 177 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2038 Mch-Chr8:22867643 Mch9g1891 Mch-Chr9:20537313 5.65E-89 dispersed
Mch9g0483 Mch-Chr9:3560491 Mch9g1891 Mch-Chr9:20537313 2.43E-90 dispersed
Mch9g1629 Mch-Chr9:18450309 Mch9g1891 Mch-Chr9:20537313 4.72E-25 dispersed
Mch9g1891 Mch-Chr9:20537313 Mch6g1933 Mch-Chr6:21837836 6.87E-10 dispersed
Mch9g1891 Mch-Chr9:20537313 Mch8g0606 Mch-Chr8:4348038 8.19E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44097 PF00847 AP2 2.60E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1891 - - - 0.0