Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1932 ATGGAAATTTTACCTCCCCTGTTCCTCTTTTTTCTCCTCTGCAACTGCTCCCTTTCAATGGCGTCTCTAAACGAAGAAGGCAATGTCCTTTTGTCTTTCAAAAACTCCATTACAGAAGACCCAGAGGGCTCCCTCAGCAACTGGAATTCTTCAGATCAAAACCCCTGTTTTTGGAATGGAGTTACATGCAAGGATCTGAGAGTTGTTTCTCTTAGCATTCCTAAGAAGAAACTTAATGGGGTTCTTCCTGCTTCTCTGGGGTTTCTCTCTGCGCTCCGCCATGTGAATCTCAGGAGCAATAAACTCCATGGAACCTTGCCATTGGAGCTTTTTCAAGCTAATGGAATCCAAAGTTTGGTGCTTTACGGGAATTCCTTCTCTGGGTCGGTGCCAACTCAGATTGGTAAGCTTAAAAACCTCCAAATCTTGGATTTGTCTCAGAATTTACTTAATGGGTCGTTGCCTGTTTCGTTAATGGAATGCAGAAGATTGAGGATTCTTGATCTTAGTCAGAATAATCTTTCCAATTCTCTGCCTAGTGGGTTTGGTTCCAGTTTGAATTTCTTGGAAAAGTTGGATCTTTCTTACAATAAGTTCAATGGGCCAATTCCTATGGACATTGGTAATTTGTCTAGCTTGCAAGGGACTGTTGATTTGTCTCATAATTTGTTTTCTGGTCCAATCCCAGCCAGCCTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACCTATAATAATTTGAGTGGTTCGATTCCCCAAAATGGTGCTCTTATCAACAGAGGACCAACTGCTTTTATTGGCAATCCTGGACTCTGTGGAGCTCCGTTGAAGAATCCGTGCTCTTTGGAGACTCCGGGCGCGAGTTCGCCGTCCTCCTTTCCATTTTTCCCGGACAATTATCCACCTGGGGGTTCTGAGGGTAGTGGTAAAAAGTATGACAAAGGAGGGGTGAGTAAGAGCACTTTGGTTGCGATAATCATCAGTGACATTATCGGTATTTGCCTGATCGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGGTTTGAGAAGGGTGGAAGAAAGGATTGTCTCTGCTTTCAGAAGGGTGAATCCGAGAACGTTTCGGAGCATATAGAGCAGTTTGATTTGGTACCTCTGGATTCACGCGTCACGTTTGATCTTGACGAGCTTCTCAAGGCATCGGCGTTCGTTTTAGGAAAAAGCGGGATCGGGATAGTGTATAAAGTTGTGCTTGAAGATGGACTTACTCTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGGTTCAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCAAATGTTGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAATTGCTTATTTATGATTATATACCAAATGGGAACCTTGCATCTGCCATTCATGGAACGACATCGTTTACACCGTTACCATGGTCTGCTCGGTTAAGAATCATGAAAGGCATTGCGAAAGGATTGGTTTACTTGCATGAGTTTAGCCCCAAAAAGTATGTCCACGGTAATTTGAAGACGAACAACATACTTCTTGGACACGACATGGTACCGCATATTTCTAATTTCGGACTCGCCCGCCTAATTAACATTGCTGGAGGTTCTAGTATGAGTTCTTACTACCAAGCCCCAGAAGCCTTCAAAGTCGTGAAGCCATCACAGAAATGGGACGTTTACTCGTACGGTGTGATATTACTCGAAATGATCACCGGAAGGTTGCCAATAGTTCAGGTGGGAGCCTCGGAAATGGATCTTGTGCAATGGATTCAACTCTGCATCGAGGAAAAGAAGCCACTCTCAGACGTTATAGACCCATCTCTGACTCCAGATGACGACACAGACGAGGAGATCATCGCGGTTTTGAAGATTGCATTAGCTTGTGTTCATAATAGTCCCGAAAGAAGACCCATGGTGAGACATGTT 2010 43.53 MEILPPLFLFFLLCNCSLSMASLNEEGNVLLSFKNSITEDPEGSLSNWNSSDQNPCFWNGVTCKDLRVVSLSIPKKKLNGVLPASLGFLSALRHVNLRSNKLHGTLPLELFQANGIQSLVLYGNSFSGSVPTQIGKLKNLQILDLSQNLLNGSLPVSLMECRRLRILDLSQNNLSNSLPSGFGSSLNFLEKLDLSYNKFNGPIPMDIGNLSSLQGTVDLSHNLFSGPIPASLGNLPEKVYIDLTYNNLSGSIPQNGALINRGPTAFIGNPGLCGAPLKNPCSLETPGASSPSSFPFFPDNYPPGGSEGSGKKYDKGGVSKSTLVAIIISDIIGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGGRKDCLCFQKGESENVSEHIEQFDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGTTSFTPLPWSARLRIMKGIAKGLVYLHEFSPKKYVHGNLKTNNILLGHDMVPHISNFGLARLINIAGGSSMSSYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLTPDDDTDEEIIAVLKIALACVHNSPERRPMVRHV 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20819970 20822421 - MC09g1494 Mch9g1932 698814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1932 670 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Mch9g1932 670 CDD STKc_IRAK 414 665 - -
Mch9g1932 670 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Mch9g1932 670 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Mch9g1932 670 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 110 IPR050647 -
Mch9g1932 670 SMART LRR_typ_2 162 185 IPR003591 -
Mch9g1932 670 SMART LRR_typ_2 137 161 IPR003591 -
Mch9g1932 670 SMART LRR_typ_2 89 113 IPR003591 -
Mch9g1932 670 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 184 - -
Mch9g1932 670 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515(InterPro)
Mch9g1932 670 Gene3D Transferase(Phosphotransferase) domain 1 484 670 - -
Mch9g1932 670 FunFam Leucine-rich repeat receptor-like protein kinase 391 483 - -
Mch9g1932 670 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Mch9g1932 670 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Mch9g1932 670 SUPERFAMILY L domain-like 25 278 - -
Mch9g1932 670 ProSiteProfiles Protein kinase domain profile. 408 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1932 670 Gene3D Ribonuclease Inhibitor 16 76 IPR032675 -
Mch9g1932 670 Gene3D Ribonuclease Inhibitor 77 284 IPR032675 -
Mch9g1932 670 Pfam Protein tyrosine and serine/threonine kinase 414 668 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1932 670 SUPERFAMILY Protein kinase-like (PK-like) 413 668 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1932 Mch-Chr9:20819970 Mch9g2356 Mch-Chr9:23523897 1.64E-116 dispersed
Mch9g1932 Mch-Chr9:20819970 Mch9g1940 Mch-Chr9:20871966 6.44E-70 proximal
Mch10g0477 Mch-Chr10:3101135 Mch9g1932 Mch-Chr9:20819970 3.11E-81 transposed
Mch1g0359 Mch-Chr1:7461927 Mch9g1932 Mch-Chr9:20819970 1.41E-76 transposed
Mch2g1270 Mch-Chr2:8825039 Mch9g1932 Mch-Chr9:20819970 7.81E-88 transposed
Mch4g2621 Mch-Chr4:26410952 Mch9g1932 Mch-Chr9:20819970 2.29E-134 transposed
Mch4g1364 Mch-Chr4:17006297 Mch9g1932 Mch-Chr9:20819970 1.82E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77711 PF00069 Pkinase 4.50E-31 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1932 - - - 0.0