Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1937 ATGGTGTTGAATAATAATAATCTGGCAATCTCAATAATTTTCACTCTCATTTTGGTGTGGGCAGAAACTGGGGCCGGCGCCGCCGTAGACCCCCACTTCGAGGCCTGCCGGCGGCCAATTTCCTGCGGCGACAACCAGACCATAAGATACCCATTCTACATCCAGAATCGCCAGCAACCCTTCTGCGGCTACCCGGGATTCGCCCTCAAATGCCACCCCAACGGCCACCCCCTCCTACGTCTCGCCGGCGGGGACTATTCCGTCCGCCGGATCTCCTACGACACCAACTCCCTCCGCCTCAGCCCGAGCTCCGGATCCGGGTCAGGGTCCGGGTGTGATTCTTTGATTAGAAATATCTCGTCCGCCCTCGGCCGCGACGAACGGTTCCGGGTCGCCCCCGGCGAGGCGTGCGGGGAGGAGGCGGCGAGAAATGGGTTTTCGGTGGAATGGACGGCGGGGGAGTGCAGATTCTGCAGCGACAGCGGTGGATTCTGTGGATTTAATGAATCGATTCACCATTTCAAGTGTTATTGCCCTGATCGCCCACATGCTTGGCACTGCACACCTATTCCGGGTGAAAGAAATAACTTGAGGATAGCACTAGGTGCTGGAGTCCCAGGTGTAATTCTGCTTATGTTATTATTTGCTCTTTGTCTTTGGTACTGCAGAAAAAGGCATGCTGCTCCAAACATCCTAACAAGGAATATATCTTGCGAACCGTTCTCAAAATTCGACCTGGAAGATGGTGGTGTGTGCTTTGAAGTCCCTGTTTTCTCCTATGTCGAACTCGAAAAGGCGACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGCGGTTTTGGAACTGTATACCATGGAAAACTTCATGATGGTCGGGAAGTTGCAGTGAAACGCCTTTATCAACATAACTACAGACGAGTAGAGCAATTCATGAACGAGGTCAAGATTCTCACCCGCCTTCGCCACAAAAATCTTGTCTCCCTTTATGGATGTACTTCAAGATGCAGTCGTGAACTTCTCCTTGTTTATGAATTCGTCCCAAATGGTACTGTTGCTGATCATCTCCATGGCGAACAAGCAAATTCTAGCTTGCTCACATGGCCCATTCGGATGAGCATTGCCATTGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCAGATATCATTCATCGTGATGTGAAGACTACCAACATTCTCTTAGACAATAACTTTTCCGTCAAAGTTGCTGATTTTGGGATCTCTAGACTATTCCCAAACGATGTCAGTCATGTCTCAACCGCTCCTCAAGGGACCCCTGGCTATGTTGATCCCGAGTATTACCAGTGTTATCAACTTACAGCCAAGAGCGACGTGTATAGTTTCGGCGTTGTATTAATCGAGCTTATATCGTCAATGCCAGCTGTGGATATAACAAGGCATCGACATGAGATTAATTTGTCTAACTTAGCTGTGAACAAAATCCTAAAACAGGAGATTGACGAGCTGATTGATCCATGCCTCGGGTCTCAATCAGATAAAAACACTCGACAGATGATAATGGCAGTGGCATGGCTAGCTTTTCTGTGTCTGCAGCAAGACAAGGAAAGGAGACCAACAATGGAAGAAGCTCTGGAGACTTTAAAGAGGATCGAGAGCGGGGAAGAAGACGGTGAGAATCTGCAGGATGATAATGGTGCAGTGTTGAAGAGCTTTGATACAGCTCCTTCTCCAGAGTATGACGAGGTTGTGTTGTTGAGGAGTAAGAGGCAGCAGTTGTCTCCTACTTCTGTTGCTGATAAATGGTTCAGCTCAACTTCATTAAATCTCAGTGCATCAACTTCAGTATCATCTCTTTCTTAG 1845 48.02 MVLNNNNLAISIIFTLILVWAETGAGAAVDPHFEACRRPISCGDNQTIRYPFYIQNRQQPFCGYPGFALKCHPNGHPLLRLAGGDYSVRRISYDTNSLRLSPSSGSGSGSGCDSLIRNISSALGRDERFRVAPGEACGEEAARNGFSVEWTAGECRFCSDSGGFCGFNESIHHFKCYCPDRPHAWHCTPIPGERNNLRIALGAGVPGVILLMLLFALCLWYCRKRHAAPNILTRNISCEPFSKFDLEDGGVCFEVPVFSYVELEKATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSRCSRELLLVYEFVPNGTVADHLHGEQANSSLLTWPIRMSIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTAKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILKQEIDELIDPCLGSQSDKNTRQMIMAVAWLAFLCLQQDKERRPTMEEALETLKRIESGEEDGENLQDDNGAVLKSFDTAPSPEYDEVVLLRSKRQQLSPTSVADKWFSSTSLNLSASTSVSSLS 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20851598 20858208 + MC09g1499 Mch9g1937 698819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1937 614 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247(InterPro)
Mch9g1937 614 Gene3D Phosphorylase Kinase; domain 1 247 346 - -
Mch9g1937 614 FunFam Wall-associated receptor kinase-like 20 347 554 - -
Mch9g1937 614 SMART serkin_6 270 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1937 614 Pfam Wall-associated receptor kinase C-terminal 139 181 IPR032872 -
Mch9g1937 614 Pfam Protein kinase domain 271 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1937 614 CDD STKc_IRAK 276 545 - -
Mch9g1937 614 Gene3D Transferase(Phosphotransferase) domain 1 347 568 - -
Mch9g1937 614 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 132 600 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Mch9g1937 614 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
Mch9g1937 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1937 614 SUPERFAMILY Protein kinase-like (PK-like) 253 545 IPR011009 -
Mch9g1937 614 ProSiteProfiles Protein kinase domain profile. 270 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1937 614 MobiDBLite consensus disorder prediction 546 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1280 Mch-Chr8:9295705 Mch9g1937 Mch-Chr9:20851598 1.95E-142 dispersed
Mch9g1937 Mch-Chr9:20851598 Mch9g2331 Mch-Chr9:23373781 1.73E-66 dispersed
Mch6g0392 Mch-Chr6:2598248 Mch9g1937 Mch-Chr9:20851598 1.15E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77712 PF00069 Pkinase 1.30E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1937 - - - 0.0