Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1940 CTCTCGTACAATGAATTTTCCGGCGGCTTCCCGGCTTCTTTGCTGTCTCTTGTCCGGCTTTACCGCCTCGATCTCTCTCACAATAACTTGACCGGAGAGATTCCGGCTTCTGTCAACCGTTTGACTCATCTTCTCACTCTCCGGCTCGAAGATAACCGGTTTTCCGGTCCGATTATCGGACTGAACCTGCCGAATCTTCAGGACTTCAACGTTTCGGGTAACCACTTCTCCGGCGCAATACCTAAATCCTTGTCGACATTTCCCGAGTCTTCTTTCGGCCAGAACAAGGGTTTATGTGGATCTCCTCTTCAGAGTTGCAAGAGCATTATCACGAAGCCGGAAAATCACCGCCACAACGGCACCGGGAAGATAGGTTCTCTGGCCCTAATCGCCATAATTCTCGGCGACATTTTGGTGTTGGCCATCGTCTCCCTTCTACTCTACTGTTATTTCTGGAAAAACTCCAATGACAAATCCCGAGACGGGAAAGGCTCGAAGCTTCTGGAGAGCGAGAAGATGGTTTACTCGTCTAGTCCGTACCCGGCCCAGGCGGGAACAGAGAGGGGGCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGCTTCGGGACTTCGTACAAGGCCATTCTCGACGACGGCAATGTCGTGGCGGTGAAACGGCTGAAGGATGCGCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCACATGGAAGTGTTGGGAAGGCTGAGACATGGGAACATCGTAAGCCTCAGAGCTTACTATTTCGCCAGAGAGGAGAAGTTATTGGTTTATGATTACATGCCCAATGGCAGTTTGTTTTGGCTTCTTCACGGGAACAGAGGCCCAGGACGGACGCCATTGGACTGGACGACGAGGTTGAAGATCGCCGCCGGCGCGGCGAGAGGTGTGGCGTTTATTCACAACTCCTGCAAGTCCCTGAGGCTGGCCCATGGCAATGTTAAATCCACCAACGTCCTTCTGGACCAATCGGGAAACCCCCGGGTCTCCGATTTCGGGCTCTCCCTTTTCACACCGCCGTCCACTCCTCGATCCAACGGCTACCGGGCGCCGGAGTGCGGCGAGGGCCGGAAACTGAGCCAGAAGTCCGACGTGTACTCATTTGGGGTTCTCCTCCTGGAGCTGCTGACCGGAAAGTGCCCTTCCGTCGTGGAGAATGGAGGGCCGGGGGGCGGTGGATACGGCGGCGTGTTGGATTTACCCCGGTGGGTCCAGTCGGTGGTGAGGGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATTGAGGAGGAAATGGTGGGGCTTCTGCAGATTGCCCTGGCCTGTACTTCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCAGGTGGTGAAGATGATCGACGAGCTTCGTGGGGTGGAGGTGTCTCCGTGCCACGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGCACATGCGGCGGAGGAGCCAGCAGTCAGTAG 1554 56.05 LSYNEFSGGFPASLLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGPIIGLNLPNLQDFNVSGNHFSGAIPKSLSTFPESSFGQNKGLCGSPLQSCKSIITKPENHRHNGTGKIGSLALIAIILGDILVLAIVSLLLYCYFWKNSNDKSRDGKGSKLLESEKMVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHGNIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLAHGNVKSTNVLLDQSGNPRVSDFGLSLFTPPSTPRSNGYRAPECGEGRKLSQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSQVVKMIDELRGVEVSPCHDGSDSVTESPSVSEGTCGGGASSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20871966 20874473 + MC09g1500 Mch9g1940 698822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1940 517 Pfam Leucine Rich Repeat 65 86 IPR001611 GO:0005515(InterPro)
Mch9g1940 517 Pfam Leucine Rich Repeat 20 40 IPR001611 GO:0005515(InterPro)
Mch9g1940 517 Pfam Protein tyrosine and serine/threonine kinase 211 480 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g1940 517 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 283 491 - -
Mch9g1940 517 FunFam pollen receptor-like kinase 1 178 282 - -
Mch9g1940 517 Gene3D Ribonuclease Inhibitor 1 112 IPR032675 -
Mch9g1940 517 ProSiteProfiles Protein kinase domain profile. 207 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g1940 517 Gene3D Phosphorylase Kinase; domain 1 181 282 - -
Mch9g1940 517 Gene3D Transferase(Phosphotransferase) domain 1 283 496 - -
Mch9g1940 517 CDD STKc_IRAK 213 484 - -
Mch9g1940 517 MobiDBLite consensus disorder prediction 495 517 - -
Mch9g1940 517 PANTHER OS05G0588300 PROTEIN 1 496 IPR050994 -
Mch9g1940 517 FunFam Leucine-rich repeat receptor-like protein kinase 17 106 - -
Mch9g1940 517 MobiDBLite consensus disorder prediction 489 517 - -
Mch9g1940 517 SUPERFAMILY Protein kinase-like (PK-like) 211 481 IPR011009 -
Mch9g1940 517 SUPERFAMILY L domain-like 1 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2236 Mch-Chr4:23929982 Mch9g1940 Mch-Chr9:20871966 1.50E-59 dispersed
Mch5g1668 Mch-Chr5:17485443 Mch9g1940 Mch-Chr9:20871966 4.16E-124 dispersed
Mch8g3115 Mch-Chr8:33507000 Mch9g1940 Mch-Chr9:20871966 8.49E-116 dispersed
Mch8g3250 Mch-Chr8:34456642 Mch9g1940 Mch-Chr9:20871966 4.82E-80 dispersed
Mch9g1237 Mch-Chr9:13889507 Mch9g1940 Mch-Chr9:20871966 3.33E-76 dispersed
Mch9g1420 Mch-Chr9:16572272 Mch9g1940 Mch-Chr9:20871966 4.42E-77 dispersed
Mch9g1940 Mch-Chr9:20871966 Mch9g2356 Mch-Chr9:23523897 4.75E-68 dispersed
Mch9g1932 Mch-Chr9:20819970 Mch9g1940 Mch-Chr9:20871966 6.44E-70 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77713 PF00069 Pkinase 7.90E-33 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1940 - - - 0.0