Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1941 ATGTTAACAGCGTTTACGCCCATTCCCAATAGTGACGCTGGTGGAGCCGTCGCCGCCATGGCTGCTGCTGCCCCGGTGAACTCGTCTTCCCAATCATGTTCCACAATCGTCGCCTTGGAATCTCCTATTCTCATTTTCGTTTTCTTCCACAAGGCTATTCGAGCTGAGCTTGATCACCTCCATCGTGACGCCATGGATTTTGCTACCAGCCAGGAAAGCGGTCGCGATATTGGGCCATTGTTGCAGCGATACCACTTCCTTCGTGCTGTTTATAAGCATCACTGTAACGCCGAGGACGAGGTCATCTTCCCGGCTCTAGATCTTCGTGTGAAAAATGTTGCCAGTACTTATTTCCTTGAACATGAAGGGGAGAGTGTTCTGTTTTGCCAATTGCTTGAGCTTCTAAATTCAAATGCGTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTTGTGCCAGAGCTCTTCAAATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTCTTCCCGTTACTTATTAAGGAGTTTTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCTTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGTGCAAGTGCTTGAGCAAAATTATTCCCGAGCAAAAGCTGCTTCAAAAGGCCATGAAGGTAATATTTTCCTGGATGGAAGATGCAAGAACGTCTAATGTCAATCAAAGTTTTTATGACGCCAATTTAGAATTTGAATGCCTAGGCTCTCAGGCCCATGATCTTATATGTATGCCAGAGAAGGGGAACGACACTTCTGAATCTTCCAGAAATGGGAAAAGGAAATACGTGGAGCAAAGTAATTTCACCTATTCTACTGTTTCAGTTGCTTGTCCAATCAATGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAAGCAGCTAGAGACCTCCGATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTACAGTTTATAGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTTCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCAGAAGAAGAGATTCAATTTGATAAGCTTAGGCACTTGATAGAAAGTATCCAAGCTGACAGAGATAAATATTCTTCTGATGAAATTCATAACAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCATAAGCACTTTCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGCCCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTAGGCATAATGCCCTTGAAATGGATAGAGCGCGTCTTGCCTTGGTTAGTAGAAACACTTAGTGAAGAAGAAGCAAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGAGTCGGATCATGCACTCGTTACCCTATTTTCTGGTTGGGCATGCAAAGGCCATCCAAGGAGCATTTGTTTTTCTGCAAGTGCTATTAGCTATTCTACTGCAAGGATATTGACTGGAGATGAAGAAGTATGCTGCTCCTTTTCTTCTGCTAATGAAAAACCTTCATGCAATCAGGCAACTGAGTATCCCATGCCATCCAACTGTGGAAAGGCAGTATGGCATGGTGACCTAAATGGGTGTCTTCCTTTGAAAAATCCGAGCAAAAAACTTCAATTCGCTCGTATGAAACACTCTGCTTGTGTCCCTGGGCTAGGAGTGGATGACAATAATCTAGGAATGAGGTCTCTGGCAGCAGCAAAATCACTGCGTTCTATGTGTTTTGGTTCTGATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTATGGAAAACGATCCAATCTCTTGCGAAAGTGATTCTAAGTCACGACCTATTGATAACATATTTAAATTTCACAAAGCAATAAGTAAAGACTTGGAGTATTTGGATAATGAATCTGCGAATCTTGGTGATTGCGATGATAGTTTCTTTAGGCAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAATGCAGAGGATGAGATAGTATTTCCTGAATTAGAATCAAAAGAAACACTTCATAATGTGAGCCACTCTTATATATTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACCGCACTTTCTAAGCTAACAAACCTTCGCAGAGACTTGAATCGTAAGAAAAAACATAACGGTCAAAATTGGATGAAGTCTCATACCTCTGATATAAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTCCGTGAGGAATCGGAACTGTGGCCATTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTTCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGACAACCAGAAATACAATGTTCAGTGACTGGCTAAATGAATGGTGGGAAGGACCTCCTGAAACATCTCCACATTATATGGAATCTGTCAGTCATATATCTGGAGGTTCTGATTCCTATGGCATCTGTGATACAAAGAATGATTCAGTCTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCCCAGGATCCAACCATTGACCCTAGAAGAAAAGATTATCTTATCCAAAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCTCAAGCAACTACTGGTGAAAACTCAGATGCAACAGAACTGATTGCAAGTGCCCCATCATTTCGTGATCCTCAGAAACAGATTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGCGATCATAAAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAATTTCAGCCTATTGGATCTGTTTGCACGACACCATCCTGTGGTGGTCTCTCAATGGCAAAATACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGGGAAGTCTATCATTGTCCTTTCTGCAATATATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGAGCCTAGAAACAGATTGCCCTATCTGCTGTGATTTTTTGTTCACATCCAGTGAAAGTGTTAGAGCTCTCCCTTGCGGCCATTTCATGCACTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTAGGAGATATGACGGTATACTTCGGCATGCTCGATGCATTACTTGCATTGGAGGTACTCCCTGAAGAATACAGGGAACGCTGTCAGGATATATTGTGCAATGACTGCTCCAAGAAGGCGAAAGCGCGCTTCCATTGGCTGTACCATAAATGTGAATTTTGTGCATCTTATAATACCAAGGTGATTAAGGTTAGCTCAGATTCCTGCTCCTCAACATTGAATTAG 3732 41.21 MLTAFTPIPNSDAGGAVAAMAAAAPVNSSSQSCSTIVALESPILIFVFFHKAIRAELDHLHRDAMDFATSQESGRDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCARALQISICQHMFKEEEQVFPLLIKEFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMCKCLSKIIPEQKLLQKAMKVIFSWMEDARTSNVNQSFYDANLEFECLGSQAHDLICMPEKGNDTSESSRNGKRKYVEQSNFTYSTVSVACPINEILHWHNAIKKELNSIAEAARDLRLSPDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIESIQADRDKYSSDEIHNKLSSHADQIIKTIHKHFHDEEMHVLPLARKHFGPQRQRELLYHSLGIMPLKWIERVLPWLVETLSEEEARSFLQNMQMAAPESDHALVTLFSGWACKGHPRSICFSASAISYSTARILTGDEEVCCSFSSANEKPSCNQATEYPMPSNCGKAVWHGDLNGCLPLKNPSKKLQFARMKHSACVPGLGVDDNNLGMRSLAAAKSLRSMCFGSDAPSLNSSLFSMENDPISCESDSKSRPIDNIFKFHKAISKDLEYLDNESANLGDCDDSFFRQFCGRFHLLWGLYKAHSNAEDEIVFPELESKETLHNVSHSYILDHKQEEELFEGISTALSKLTNLRRDLNRKKKHNGQNWMKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELWPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQTTRNTMFSDWLNEWWEGPPETSPHYMESVSHISGGSDSYGICDTKNDSVFKPGWKEIFRMNENELESEIRKVAQDPTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDATELIASAPSFRDPQKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHKMDRKASTEMMCMRCLKFQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERSLETDCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSKKAKARFHWLYHKCEFCASYNTKVIKVSSDSCSSTLN 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20877995 20885815 + MC09g1501 Mch9g1941 698823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1941 1243 CDD RING-H2_Pirh2-like 1124 1167 - -
Mch9g1941 1243 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270(InterPro)
Mch9g1941 1243 Pfam Ring finger domain 1124 1166 IPR001841 -
Mch9g1941 1243 SUPERFAMILY RING/U-box 1124 1171 - -
Mch9g1941 1243 CDD Hr-like 313 440 - -
Mch9g1941 1243 Gene3D nmb1532 protein domain like 646 872 - -
Mch9g1941 1243 Gene3D - 1196 1237 - -
Mch9g1941 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1124 IPR017921 -
Mch9g1941 1243 SUPERFAMILY Zinc hairpin stack 1062 1117 IPR037275 -
Mch9g1941 1243 FunFam Zinc finger protein BRUTUS 646 876 - -
Mch9g1941 1243 FunFam Zinc finger protein-related isoform 1 1120 1169 - -
Mch9g1941 1243 Gene3D nmb1532 protein domain like 312 457 - -
Mch9g1941 1243 Gene3D nmb1532 protein domain like 41 193 - -
Mch9g1941 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1169 IPR013083 -
Mch9g1941 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1231 - -
Mch9g1941 1243 Pfam Zinc-ribbon 1172 1229 IPR039512 -
Mch9g1941 1243 ProSiteProfiles Zinc finger RING-type profile. 1125 1167 IPR001841 -
Mch9g1941 1243 SMART ring_2 1125 1166 IPR001841 -
Mch9g1941 1243 Pfam Hemerythrin HHE cation binding domain 45 175 IPR012312 -
Mch9g1941 1243 Pfam Hemerythrin HHE cation binding domain 310 442 IPR012312 -
Mch9g1941 1243 Pfam Hemerythrin HHE cation binding domain 651 811 IPR012312 -
Mch9g1941 1243 SUPERFAMILY CHY zinc finger-like 988 1052 IPR037274 GO:0008270(InterPro)
Mch9g1941 1243 CDD Hr-like 655 811 - -
Mch9g1941 1243 Pfam CHY zinc finger 996 1064 IPR008913 GO:0008270(InterPro)
Mch9g1941 1243 CDD Hr-like 45 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0204 Mch-Chr6:1357557 Mch9g1941 Mch-Chr9:20877995 1.77E-243 dispersed
Mch9g0796 Mch-Chr9:5940433 Mch9g1941 Mch-Chr9:20877995 7.26E-44 dispersed
Mch6g0390 Mch-Chr6:2568298 Mch9g1941 Mch-Chr9:20877995 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1941 K16276 - csv:101217252 2081.6