Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1987 ATGGATTTCGTTGATAACATTTTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCCGATGCTTTGGATCAGGAACGCCGCAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGATCTCGTTACCAGAGCCATTGAATCTTGCCGGCAGCAGTTTTCTGGGTTGTCGACGGAGAGCTCCGAGCATACGTCCAGCGACGGCCCTGTTTTGGAGGAGTTTATTCCGATTAATAAAATTCCGGTTACTTCTCATTCTGAAGATGAACAATCGGAACCGGATAAGAATGACGTAGGTCGATCCGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACTCCCGATCCTCCAATCACAGAGGATGTTTCCAAGAAAACGACTTCGGTTGTTGGTGAGGTAAAAAATAATGGCGGTGGCGGTGCTTTTCAGCCATTCCAGAAGGAGAAATCTCCGTTGAAAACAGAGGCGGCGCCGGTCGTCGGTAAAACGCTCGGTTCTTCTTCGGTGCCGGAGGCGACGACGAGTTCGACTGCGGAAACCGCCTCCAAAGGCAGCGGTGGAACCAGTAAACGGGAAGATAAGGAATCTCAGACTCAGAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCTTACACGCCCTACAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGGGAGTTGATGAAGGTGGAGGGCCTCACTAATGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCCAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAACTCATCGGCGCCGCCGCAATTCGTGGTGGTCGGGAGCATATGGGTGCCGCAGCCACCGAAATCCGCGGCGGTGGCGACACCGGAAGTAAGAAATGGAATTTACGCCCCGGTGGCGACGCCGGTGCCGTCTTCCGGCAAAACCCAAAGGCCACGGCAGAGGGCGTCGGACCACAGCGCCGGAGTGGCTCATTCGAATTCTCCGGCGACTTCGTCATCCACCCACACCACCACAGCCTCCCCGTCGGCGTAG 1065 53.43 MDFVDNILDIRVGMDLRHYADALDQERRKIQVFQRELPLCLDLVTRAIESCRQQFSGLSTESSEHTSSDGPVLEEFIPINKIPVTSHSEDEQSEPDKNDVGRSDWLKSAQLWNQTPDPPITEDVSKKTTSVVGEVKNNGGGGAFQPFQKEKSPLKTEAAPVVGKTLGSSSVPEATTSSTAETASKGSGGTSKREDKESQTQRKQRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVEGLTNDEVKSHLQKYRLHARRPTNSAMQDSGNSSAPPQFVVVGSIWVPQPPKSAAVATPEVRNGIYAPVATPVPSSGKTQRPRQRASDHSAGVAHSNSPATSSSTHTTTASPSA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21209727 21212077 - MC09g1547 Mch9g1987 698869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1987 354 MobiDBLite consensus disorder prediction 168 187 - -
Mch9g1987 354 MobiDBLite consensus disorder prediction 307 354 - -
Mch9g1987 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 258 IPR006447 GO:0003677(InterPro)
Mch9g1987 354 MobiDBLite consensus disorder prediction 330 354 - -
Mch9g1987 354 SUPERFAMILY Homeodomain-like 200 261 IPR009057 -
Mch9g1987 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 327 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1987 354 MobiDBLite consensus disorder prediction 188 208 - -
Mch9g1987 354 MobiDBLite consensus disorder prediction 81 102 - -
Mch9g1987 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 260 IPR017930 -
Mch9g1987 354 MobiDBLite consensus disorder prediction 87 102 - -
Mch9g1987 354 Coils Coil 16 36 - -
Mch9g1987 354 Gene3D - 202 259 - -
Mch9g1987 354 Pfam Myb-like DNA-binding domain 205 256 IPR001005 -
Mch9g1987 354 MobiDBLite consensus disorder prediction 132 208 - -
Mch9g1987 354 FunFam Myb family transcription factor 202 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0769 Mch-Chr6:5308208 Mch9g1987 Mch-Chr9:21209727 1.14E-44 dispersed
Mch8g3114 Mch-Chr8:33492882 Mch9g1987 Mch-Chr9:21209727 7.05E-51 dispersed
Mch4g1328 Mch-Chr4:16489325 Mch9g1987 Mch-Chr9:21209727 4.76E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44103 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1987 - - - 0.0