Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1987 ATGGATTTCGTTGATAACATTTTGGATATTCGAGTGGGAATGGATTTGAGGCACTATGCCGATGCTTTGGATCAGGAACGCCGCAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGATCTCGTTACCAGAGCCATTGAATCTTGCCGGCAGCAGTTTTCTGGGTTGTCGACGGAGAGCTCCGAGCATACGTCCAGCGACGGCCCTGTTTTGGAGGAGTTTATTCCGATTAATAAAATTCCGGTTACTTCTCATTCTGAAGATGAACAATCGGAACCGGATAAGAATGACGTAGGTCGATCCGATTGGCTTAAATCCGCTCAGCTTTGGAATCAAACTCCCGATCCTCCAATCACAGAGGATGTTTCCAAGAAAACGACTTCGGTTGTTGGTGAGGTAAAAAATAATGGCGGTGGCGGTGCTTTTCAGCCATTCCAGAAGGAGAAATCTCCGTTGAAAACAGAGGCGGCGCCGGTCGTCGGTAAAACGCTCGGTTCTTCTTCGGTGCCGGAGGCGACGACGAGTTCGACTGCGGAAACCGCCTCCAAAGGCAGCGGTGGAACCAGTAAACGGGAAGATAAGGAATCTCAGACTCAGAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCTTACACGCCCTACAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGGGAGTTGATGAAGGTGGAGGGCCTCACTAATGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCCAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAACTCATCGGCGCCGCCGCAATTCGTGGTGGTCGGGAGCATATGGGTGCCGCAGCCACCGAAATCCGCGGCGGTGGCGACACCGGAAGTAAGAAATGGAATTTACGCCCCGGTGGCGACGCCGGTGCCGTCTTCCGGCAAAACCCAAAGGCCACGGCAGAGGGCGTCGGACCACAGCGCCGGAGTGGCTCATTCGAATTCTCCGGCGACTTCGTCATCCACCCACACCACCACAGCCTCCCCGTCGGCGTAG 1065 53.43 MDFVDNILDIRVGMDLRHYADALDQERRKIQVFQRELPLCLDLVTRAIESCRQQFSGLSTESSEHTSSDGPVLEEFIPINKIPVTSHSEDEQSEPDKNDVGRSDWLKSAQLWNQTPDPPITEDVSKKTTSVVGEVKNNGGGGAFQPFQKEKSPLKTEAAPVVGKTLGSSSVPEATTSSTAETASKGSGGTSKREDKESQTQRKQRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVEGLTNDEVKSHLQKYRLHARRPTNSAMQDSGNSSAPPQFVVVGSIWVPQPPKSAAVATPEVRNGIYAPVATPVPSSGKTQRPRQRASDHSAGVAHSNSPATSSSTHTTTASPSA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21209727 21212077 - MC09g1547 Mch9g1987 698869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1987 354 MobiDBLite consensus disorder prediction 168 187 - -
Mch9g1987 354 MobiDBLite consensus disorder prediction 307 354 - -
Mch9g1987 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 258 IPR006447 GO:0003677(InterPro)
Mch9g1987 354 MobiDBLite consensus disorder prediction 330 354 - -
Mch9g1987 354 SUPERFAMILY Homeodomain-like 200 261 IPR009057 -
Mch9g1987 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 327 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1987 354 MobiDBLite consensus disorder prediction 188 208 - -
Mch9g1987 354 MobiDBLite consensus disorder prediction 81 102 - -
Mch9g1987 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 260 IPR017930 -
Mch9g1987 354 MobiDBLite consensus disorder prediction 87 102 - -
Mch9g1987 354 Coils Coil 16 36 - -
Mch9g1987 354 Gene3D - 202 259 - -
Mch9g1987 354 Pfam Myb-like DNA-binding domain 205 256 IPR001005 -
Mch9g1987 354 MobiDBLite consensus disorder prediction 132 208 - -
Mch9g1987 354 FunFam Myb family transcription factor 202 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0769 Mch-Chr6:5308208 Mch9g1987 Mch-Chr9:21209727 1.14E-44 dispersed
Mch8g3114 Mch-Chr8:33492882 Mch9g1987 Mch-Chr9:21209727 7.05E-51 dispersed
Mch4g1328 Mch-Chr4:16489325 Mch9g1987 Mch-Chr9:21209727 4.76E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44103 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Mch TF