Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1988 ATGGACGGAATTTGCATTGACGAAACCACTTCCACCGAGTCTCAATCCACCACCTCTAATAATGCTCCATTGGTTTTTCCGGCGGCGGTGCTGAAGTTATCTCCGCCGCCGCCGGAGACCAGCGTGGTTCTGGACTCGGAATCCAGCGGCGGATCAGTGGTGGAAGCGGAGTCACGAAAGCTTCCATCCTCTCGTTACAAAGGCGTGGTCCCACAGCCGAACGGCCGGTGGGGGGCGCAGATTTACGAGAAGCACCAGCGGGTGTGGCTGGGCACCTTCAACGAAGAGGACGAAGCCGCACGTGCCTACGACGTGGCCGCCCAGCGCTTCCGCGGACGCGACGCCGTAACTAATTTCAAACCCCTCTCACGCGCCCAACAAGACGATGTGGAATCCACCTTCCTCAATTCCCATTCCAAGGCCGAGATCGTCGACATGCTCCGTAAGCACACCTACCACGACGAGCTCCACCAGAGCAAGCGCAACGCCGGTTTACTACACCCCAACCGGAACCGGACCCTGACCGACCGCCACTCCGACCCGGCTCCGGCCCGAGAACTCCTTTTCGAAAAAGCCGTCACCCCGAGCGACGTCGGCAAACTCAACCGTCTCGTCATCCCGAAACAGCACGCCGAGAAGAACTTCCCTCTCCAGACCGGGTCCGCCTCGTCCAAAGGGCTGCTGCTCAACTTCGAAGACGGCGGAGGGAAAGTGTGGCGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAAAAGAATCTGAAAGCCGGCGACATTGTCAGCTTCCTCAAGTCCACCGGACCGGACAAACAGCTCTACATCCAATGGAAGGCCAGGATGACCGGAACCAACCCCAACCCTGTTCAGACCGTCAGATTGTTCGGGGTCAACATTTTCAAGGTCTCCGCAACCGCTGCGGGAGGTGCGGAGAGTATAAATGGGTGCAGTGAGAAGAGGAGGACAGAAATGGAATTACTCTCATTACAATGCACCAAGAAGCAAAGAATAGTCGGA 1053 57.55 MDGICIDETTSTESQSTTSNNAPLVFPAAVLKLSPPPPETSVVLDSESSGGSVVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSRAQQDDVESTFLNSHSKAEIVDMLRKHTYHDELHQSKRNAGLLHPNRNRTLTDRHSDPAPARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGPDKQLYIQWKARMTGTNPNPVQTVRLFGVNIFKVSATAAGGAESINGCSEKRRTEMELLSLQCTKKQRIVG 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21216481 21217533 - MC09g1548 Mch9g1988 698870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1988 351 Pfam B3 DNA binding domain 189 288 IPR003340 GO:0003677(InterPro)
Mch9g1988 351 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Mch9g1988 351 MobiDBLite consensus disorder prediction 37 57 - -
Mch9g1988 351 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1988 351 SMART B3_2 189 293 IPR003340 GO:0003677(InterPro)
Mch9g1988 351 CDD B3_DNA 188 275 IPR003340 GO:0003677(InterPro)
Mch9g1988 351 SMART rav1_2 65 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1988 351 MobiDBLite consensus disorder prediction 1 20 - -
Mch9g1988 351 Gene3D - 180 299 IPR015300 -
Mch9g1988 351 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1988 351 ProSiteProfiles B3 DNA-binding domain profile. 189 292 IPR003340 GO:0003677(InterPro)
Mch9g1988 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 64 311 IPR044800 GO:0003700(InterPro)
Mch9g1988 351 Pfam AP2 domain 64 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1988 351 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677(InterPro)
Mch9g1988 351 SUPERFAMILY DNA-binding pseudobarrel domain 187 280 IPR015300 -
Mch9g1988 351 CDD AP2 64 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1101 Mch-Chr6:8033419 Mch9g1988 Mch-Chr9:21216481 4.38E-55 dispersed
Mch6g2382 Mch-Chr6:25689779 Mch9g1988 Mch-Chr9:21216481 6.16E-46 dispersed
Mch9g1988 Mch-Chr9:21216481 Mch10g0288 Mch-Chr10:1902246 1.36E-13 dispersed
Mch9g1988 Mch-Chr9:21216481 Mch11g1046 Mch-Chr11:7283457 7.48E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44104 PF02362 B3 1.10E-27 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1988 K09287 - csv:101203784 503.056