Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g1993 TGCTCACAAACAATAGAGAATATGTTTCAAGAACAGCTTCTTCTCCAACATCAGCTCCAAAACAATACCAACGATAATATTATATATGGAGATCATCATCAGCATCATCTTCATCATGGAGTACTTGGAGGTGGTGGAAGAGGGTTGATTTTCCCGGCAGAAGTAATCTCGCCGGTTCTCCACCCGCCGTGGCCGCCGCTCCCGGTCCGACAGCACAACCCATTTCTGGTCCCTGCTCCTCTTCCTCCTCCTCGCCCATCATATGAATACTCGGCATCATCTTCATCATTTGGTAGTTTGTTTAACCGGAGACGTATTAATTGTGTGCAGTTTGGTTACGACGGTCCATCGGCGGCGGACCACCTGGGGCGGATCATATCGAGCACGCTTGGACCGGTGGGTTCGGGAGCTCCGTTTGGGCTACAAGCGGAGCTTGGGAAGATGAGTGCTCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGCGGAGAAGAAGAGAAAGAATCAATAACCATCTGGCTAAGCTCCGTAGTTTGCTTCCAAGTACCACTAAAACGGACAAAGCTTCATTACTAGCAGAAGTAATACAGCACGTGAAGGAGCTAAAGCGCCAAACGTGTGCAATAGCGGAAACAAGCCCAATTCCCAGCGAAGCCGACGAGCTAACTGTCGACGACGCCTCCGATGAGAGCGGTGGCGGCAAGTTCGTAATAAAGGCCTCTCTTTGCTGCGACGACCGCTCCGACCTCCTCCCCGACCTCATCAAAACACTCAAATCTCTGCGTTTACGGACGCTAAAAGCTGAGATCACCACCCTCGGCGGTCGCGTTAGAAATGTCTTGTTCGTCACCAGAGACGACGAGGACAGCAGCAGCAACAATAGCATAAGCTCTATTCAAGAAGCACTCAAGGCTGTCATGGAGAAGCCCGGAGGAGGGGATGATTCTTCTTCCGGGAATATTAAAAGACAAAGGACAAATAACAACATCAATATCCTTTAA 1023 49.36 CSQTIENMFQEQLLLQHQLQNNTNDNIIYGDHHQHHLHHGVLGGGGRGLIFPAEVISPVLHPPWPPLPVRQHNPFLVPAPLPPPRPSYEYSASSSSFGSLFNRRRINCVQFGYDGPSAADHLGRIISSTLGPVGSGAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTCAIAETSPIPSEADELTVDDASDESGGGKFVIKASLCCDDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTRDDEDSSSNNSISSIQEALKAVMEKPGGGDDSSSGNIKRQRTNNNINIL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21259412 21262744 - MC09g1553 Mch9g1993 698875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g1993 340 CDD bHLH_AtAIG1_like 155 232 - -
Mch9g1993 340 MobiDBLite consensus disorder prediction 315 340 - -
Mch9g1993 340 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983(InterPro)
Mch9g1993 340 PANTHER TRANSCRIPTION FACTOR BHLH30 142 333 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g1993 340 SMART finulus 166 215 IPR011598 GO:0046983(InterPro)
Mch9g1993 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 213 IPR036638 GO:0046983(InterPro)
Mch9g1993 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983(InterPro)
Mch9g1993 340 FunFam transcription factor bHLH30 155 218 - -
Mch9g1993 340 MobiDBLite consensus disorder prediction 324 340 - -
Mch9g1993 340 Gene3D - 155 215 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0667 Mch-Chr2:4565664 Mch9g1993 Mch-Chr9:21259412 1.09E-37 dispersed
Mch4g2497 Mch-Chr4:25715280 Mch9g1993 Mch-Chr9:21259412 4.04E-31 dispersed
Mch8g0276 Mch-Chr8:1896120 Mch9g1993 Mch-Chr9:21259412 2.08E-31 dispersed
Mch8g0278 Mch-Chr8:1916034 Mch9g1993 Mch-Chr9:21259412 2.08E-31 dispersed
Mch9g1993 Mch-Chr9:21259412 Mch8g0673 Mch-Chr8:4792215 1.90E-06 dispersed
Mch1g1381 Mch-Chr1:15712643 Mch9g1993 Mch-Chr9:21259412 2.18E-20 transposed
Mch4g1238 Mch-Chr4:14184663 Mch9g1993 Mch-Chr9:21259412 1.73E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44106 PF00010 HLH 1.60E-12 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g1993 - - - 0.0