Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2027 ATGGGAATTACAACGCAATCTTCCATTTTCTTCTTCTTGTTTTGCGTATGGAATTCTTCTGTAAATGCCTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGACCCACATTCGGTTCTTAATTGGGACGAAAACGCCGTGGATCCTTGTAGCTGGACCATGATCACTTGTTCTCCTGATAAATTCGTCATTAGCTTAGGAGCTCCAAGTCAAAACTTGTCCGGCAGCCTGTCACCGGGCATCGGAAACCTGACGAATCTCCAATCAATGCTTCTACAAGACAATAATATATCAGGAGGAATCCCATGGGAGGTTGGGAACATACCAAATCTGGAGACTCTTGATCTTTCAAGCAATGACTTCCATGGCCAAATTCCAACCTCTCTTTCCCATCTTAGAAGTCTGCAATATCTGCGGCTGAATAACAACAGTCTTTCTGGGACAATCCCTTCATCACTGGCCAACATGACTCAGCTCGCATTAATGGACCTCTCTTTTAATAATCTCAGTGGCCCATTGCCCACATTGCTACCTAAAACCTACAATCTGGCTGGGAATACACTGATTTGCTCAACTGGGTTGGAGCATAGGTGCAATGGAACTGCTCCTCCTGTTTTATTTGCAGTCAATAATCCTCAAAATCCTCAACCTTCTGGGAGATCGAAGGGCCACGAATTAGCCTTGGCTTTTGGCTCAAGCCTCGGATGCGTTTTTCTGCTAACTTCAGGGTTCGGCTTCTTTATTTGGTGGAGGCAAAGACATAACCAGCAAATTTTCTTCGATGTTAATGACCAACGATTTGAGGAAGTTTGCCTTGGGAACCTAAGAATTTTCCAGTTCAGAGAGCTTCAAGCAGCCACAAACAACTTCAGCAGCAAACACTTGGTGGGAAAAGGCGGGTTTGGAAACGTTTACAAAGGGTACCTTCAAGATGGTACAATCATAGCAGTGAAGAGGCTGAAAGATGGAAATGCAATGAGAGGAGAGATCCAATTCCAGACCGAAGTCGAGATGATCAGCCTAGCCGTGCACCGTAACCTCCTACGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTAGTTTACCCCTATATGTCCAACGGCAGTGTTGCATCCCGTCTAAAAGCTCTGGATTGGAGCACGAGGAAGAGAATAGCATTGGGTGCAGCAAGGGGCCTACTGTATTTGCATGAACAGTGTGACCCTAAGATTATTCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGATTATTGCGATGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTTTTGGATCACAGAGATTCACATGTCACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGTTGATCACTGGCCAGAGAGCTCTCGAG 1494 45.31 MGITTQSSIFFFLFCVWNSSVNALLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPDKFVISLGAPSQNLSGSLSPGIGNLTNLQSMLLQDNNISGGIPWEVGNIPNLETLDLSSNDFHGQIPTSLSHLRSLQYLRLNNNSLSGTIPSSLANMTQLALMDLSFNNLSGPLPTLLPKTYNLAGNTLICSTGLEHRCNGTAPPVLFAVNNPQNPQPSGRSKGHELALAFGSSLGCVFLLTSGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKHLVGKGGFGNVYKGYLQDGTIIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCDAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21513695 21518014 + MC09g1577 Mch9g2027 698909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2027 498 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 497 - -
Mch9g2027 498 SMART serkin_6 301 498 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2027 498 Gene3D Transferase(Phosphotransferase) domain 1 378 498 - -
Mch9g2027 498 SUPERFAMILY Protein kinase-like (PK-like) 280 496 IPR011009 -
Mch9g2027 498 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515(InterPro)
Mch9g2027 498 SUPERFAMILY L domain-like 33 194 - -
Mch9g2027 498 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 211 - -
Mch9g2027 498 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
Mch9g2027 498 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Mch9g2027 498 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Mch9g2027 498 FunFam Os07g0541700 protein 383 460 - -
Mch9g2027 498 ProSiteProfiles Protein kinase domain profile. 301 498 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2027 498 Pfam Protein kinase domain 302 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2027 498 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Mch9g2027 498 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Mch9g2027 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g2027 498 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0035 Mch-Chr8:204411 Mch9g2027 Mch-Chr9:21513695 2.14E-173 dispersed
Mch9g2027 Mch-Chr9:21513695 Mch6g0807 Mch-Chr6:5618986 4.44E-67 dispersed
Mch4g2400 Mch-Chr4:25103365 Mch9g2027 Mch-Chr9:21513695 4.50E-202 wgd
Mch4g1546 Mch-Chr4:18782427 Mch9g2027 Mch-Chr9:21513695 5.56E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77716 PF00069 Pkinase 6.10E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2027 - - - 0.0