Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g2027 | ATGGGAATTACAACGCAATCTTCCATTTTCTTCTTCTTGTTTTGCGTATGGAATTCTTCTGTAAATGCCTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGACCCACATTCGGTTCTTAATTGGGACGAAAACGCCGTGGATCCTTGTAGCTGGACCATGATCACTTGTTCTCCTGATAAATTCGTCATTAGCTTAGGAGCTCCAAGTCAAAACTTGTCCGGCAGCCTGTCACCGGGCATCGGAAACCTGACGAATCTCCAATCAATGCTTCTACAAGACAATAATATATCAGGAGGAATCCCATGGGAGGTTGGGAACATACCAAATCTGGAGACTCTTGATCTTTCAAGCAATGACTTCCATGGCCAAATTCCAACCTCTCTTTCCCATCTTAGAAGTCTGCAATATCTGCGGCTGAATAACAACAGTCTTTCTGGGACAATCCCTTCATCACTGGCCAACATGACTCAGCTCGCATTAATGGACCTCTCTTTTAATAATCTCAGTGGCCCATTGCCCACATTGCTACCTAAAACCTACAATCTGGCTGGGAATACACTGATTTGCTCAACTGGGTTGGAGCATAGGTGCAATGGAACTGCTCCTCCTGTTTTATTTGCAGTCAATAATCCTCAAAATCCTCAACCTTCTGGGAGATCGAAGGGCCACGAATTAGCCTTGGCTTTTGGCTCAAGCCTCGGATGCGTTTTTCTGCTAACTTCAGGGTTCGGCTTCTTTATTTGGTGGAGGCAAAGACATAACCAGCAAATTTTCTTCGATGTTAATGACCAACGATTTGAGGAAGTTTGCCTTGGGAACCTAAGAATTTTCCAGTTCAGAGAGCTTCAAGCAGCCACAAACAACTTCAGCAGCAAACACTTGGTGGGAAAAGGCGGGTTTGGAAACGTTTACAAAGGGTACCTTCAAGATGGTACAATCATAGCAGTGAAGAGGCTGAAAGATGGAAATGCAATGAGAGGAGAGATCCAATTCCAGACCGAAGTCGAGATGATCAGCCTAGCCGTGCACCGTAACCTCCTACGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTAGTTTACCCCTATATGTCCAACGGCAGTGTTGCATCCCGTCTAAAAGCTCTGGATTGGAGCACGAGGAAGAGAATAGCATTGGGTGCAGCAAGGGGCCTACTGTATTTGCATGAACAGTGTGACCCTAAGATTATTCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGATTATTGCGATGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTTTTGGATCACAGAGATTCACATGTCACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGTTGATCACTGGCCAGAGAGCTCTCGAG | 1494 | 45.31 | MGITTQSSIFFFLFCVWNSSVNALLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPDKFVISLGAPSQNLSGSLSPGIGNLTNLQSMLLQDNNISGGIPWEVGNIPNLETLDLSSNDFHGQIPTSLSHLRSLQYLRLNNNSLSGTIPSSLANMTQLALMDLSFNNLSGPLPTLLPKTYNLAGNTLICSTGLEHRCNGTAPPVLFAVNNPQNPQPSGRSKGHELALAFGSSLGCVFLLTSGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKHLVGKGGFGNVYKGYLQDGTIIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCDAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALE | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 21513695 | 21518014 | + | MC09g1577 | Mch9g2027 | 698909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g2027 | 498 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 10 | 497 | - | - | |
Mch9g2027 | 498 | SMART | serkin_6 | 301 | 498 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch9g2027 | 498 | Gene3D | Transferase(Phosphotransferase) domain 1 | 378 | 498 | - | - | |
Mch9g2027 | 498 | SUPERFAMILY | Protein kinase-like (PK-like) | 280 | 496 | IPR011009 | - | |
Mch9g2027 | 498 | Pfam | Leucine rich repeat | 120 | 180 | IPR001611 | GO:0005515(InterPro) | |
Mch9g2027 | 498 | SUPERFAMILY | L domain-like | 33 | 194 | - | - | |
Mch9g2027 | 498 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 30 | 211 | - | - | |
Mch9g2027 | 498 | Pfam | Leucine Rich Repeat | 97 | 118 | IPR001611 | GO:0005515(InterPro) | |
Mch9g2027 | 498 | ProSitePatterns | Protein kinases ATP-binding region signature. | 307 | 329 | IPR017441 | GO:0005524(InterPro) | |
Mch9g2027 | 498 | Gene3D | Phosphorylase Kinase; domain 1 | 270 | 377 | - | - | |
Mch9g2027 | 498 | FunFam | Os07g0541700 protein | 383 | 460 | - | - | |
Mch9g2027 | 498 | ProSiteProfiles | Protein kinase domain profile. | 301 | 498 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch9g2027 | 498 | Pfam | Protein kinase domain | 302 | 496 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch9g2027 | 498 | Pfam | Leucine rich repeat N-terminal domain | 31 | 69 | IPR013210 | - | |
Mch9g2027 | 498 | FunFam | Somatic embryogenesis receptor kinase 1 | 270 | 377 | - | - | |
Mch9g2027 | 498 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 417 | 429 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch9g2027 | 498 | Gene3D | Ribonuclease Inhibitor | 30 | 211 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0035 | Mch-Chr8:204411 | Mch9g2027 | Mch-Chr9:21513695 | 2.14E-173 | dispersed | |
Mch9g2027 | Mch-Chr9:21513695 | Mch6g0807 | Mch-Chr6:5618986 | 4.44E-67 | dispersed | |
Mch4g2400 | Mch-Chr4:25103365 | Mch9g2027 | Mch-Chr9:21513695 | 4.50E-202 | wgd | |
Mch4g1546 | Mch-Chr4:18782427 | Mch9g2027 | Mch-Chr9:21513695 | 5.56E-210 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77716 | PF00069 | Pkinase | 6.10E-41 | CL0016 | Mch | PK |
Pathway information
