Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g2038 | ATGGATATTGGTGACACAGATAAATTTAGACTAGAAAGTAGCACAGGGGATTCTATTAACTATTCACATAGCATGTCTTCGGACTGGCGATTTGGCGAGACGACTCTCATGAATATTCCGATGGGTTTGGTTTTGCCAGGGAATGTGGATGTAATTAGGAATCAGGATATGGTCGGTTGTTCTTCTTCCACTGCTCCTGTAGTAGAGCCATTCAGCTCTACCATTTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCGAGACCAGAACAACTGCAGTACTTCTTCAAACACCATAGCAATTAGCAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGACAGAACACTTGACATCAGCTGGAACCTATCACATTCTAGGTTGAAAGGAGGAGTTTACCTACCAAATATTCCCGGTCCGCTCCCACCGAGCTTATCTCAACTTCCAGCCGATTCTTCATTTATCGAGCGTGCAGCCAGGCTCTCATGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAACATTCCTGAGCCTATGTGTGCTTTTTCTAGAGGCATGGGAGTAATACCGGAGAGAAGGGATAATATTTCTCGAAATGGGTTAGTATCTGAAACTGGAGGACAATCTCAAAGAAACATGGTTGACAGTAGTGAAGCTTCCAAACCTGTTTCTTTGACTAATGAACATGGAGCTACTGGAAGGACTTTGCCAGAAAGTGAAAGCCCTTTGAAATTGAATGATCGTGGTAAACTTGCCATTGATGGGTCTGCTAATGATTCTGATAAAGCTGAGTTTAGCAGTGGTGATGGTTCTGGTGAGCCTTGTATGTTGGAGGTTACAGGTAAGGAACTTTCTGCCAAGGGCTTCGGCTCAAGGAAAAGGAAAAGGACTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAAATGGTGTTTCAGCTAAAGATAATATCGATACTCAGCGGAAGGGAGATCAAAATCCAAGTTCAACCACAAACAAGGGTACAGTAAAACATGGTAAACAGGCACCTCAACCTTCAGATCCGCCAAAGGAAGAATATATTCATGTTAGAGCTCGGAGGGGCCAGGCGACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATTAGTGAGAGGATGAAGTTCCTTCAAGAACTAGTCCCCGGTTGCAGCAAGGTTACTGGCAAGGCAGTTATGCTAGACGAAATCATAAACTACGTCCAATCGCTGCAACGACAAGTTGAGTTTTTATCAATGAAACTCGCTACTGTTAATCCAAGGTTGGATATCAACATTGATGGACTCCTAGCCAAAGATATTCTTCAATCACGAGCTGGTCCATCGTCGGGATTTTCTTCACATATGCCCATTACGGGTCCCCTGCCAAGTATTTCTCATCATGGACTTATCCCAAGCAGTTTTCCTGCCATAGGGAGCTGTGAGATGTTAAGAAGCACAATAAATTCCCAGATGACTCCAATGTCCGGTGGATTTAAGGAGCGTACTCAGATAAAGAATGTGTGGGATGGTGAACTTCAAAACATTGTGCAGATGAGCTTTGGGATGTCTACTCCCCCCAGTTGTTTAGAAATTGATGGTACA | 1647 | 43.9 | MDIGDTDKFRLESSTGDSINYSHSMSSDWRFGETTLMNIPMGLVLPGNVDVIRNQDMVGCSSSTAPVVEPFSSTIWEQAANCQNLGICNIRDQNNCSTSSNTIAISKASGCPVSLSSDIDRTLDISWNLSHSRLKGGVYLPNIPGPLPPSLSQLPADSSFIERAARLSCFSGGNFGDIVGHFNIPEPMCAFSRGMGVIPERRDNISRNGLVSETGGQSQRNMVDSSEASKPVSLTNEHGATGRTLPESESPLKLNDRGKLAIDGSANDSDKAEFSSGDGSGEPCMLEVTGKELSAKGFGSRKRKRTGQKTELDQANGPLQQNGVSAKDNIDTQRKGDQNPSSTTNKGTVKHGKQAPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLLAKDILQSRAGPSSGFSSHMPITGPLPSISHHGLIPSSFPAIGSCEMLRSTINSQMTPMSGGFKERTQIKNVWDGELQNIVQMSFGMSTPPSCLEIDGT | 549 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 21596402 | 21598729 | + | MC09g1587 | Mch9g2038 | 698920 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g2038 | 549 | Gene3D | - | 372 | 445 | IPR036638 | GO:0046983(InterPro) | |
| Mch9g2038 | 549 | MobiDBLite | consensus disorder prediction | 311 | 352 | - | - | |
| Mch9g2038 | 549 | Pfam | Helix-loop-helix DNA-binding domain | 378 | 426 | IPR011598 | GO:0046983(InterPro) | |
| Mch9g2038 | 549 | MobiDBLite | consensus disorder prediction | 208 | 243 | - | - | |
| Mch9g2038 | 549 | SMART | finulus | 381 | 431 | IPR011598 | GO:0046983(InterPro) | |
| Mch9g2038 | 549 | MobiDBLite | consensus disorder prediction | 207 | 363 | - | - | |
| Mch9g2038 | 549 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 151 | 535 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Mch9g2038 | 549 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
| Mch9g2038 | 549 | CDD | bHLH_AtBPE_like | 365 | 450 | - | - | |
| Mch9g2038 | 549 | FunFam | Basic helix-loop-helix transcription factor | 372 | 444 | - | - | |
| Mch9g2038 | 549 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 373 | 443 | IPR036638 | GO:0046983(InterPro) | |
| Mch9g2038 | 549 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 375 | 425 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g1111 | Mch-Chr2:7534378 | Mch9g2038 | Mch-Chr9:21596402 | 3.39E-39 | dispersed | |
| Mch6g0383 | Mch-Chr6:2538331 | Mch9g2038 | Mch-Chr9:21596402 | 5.26E-30 | dispersed | |
| Mch9g1063 | Mch-Chr9:9814014 | Mch9g2038 | Mch-Chr9:21596402 | 1.40E-40 | dispersed | |
| Mch9g2038 | Mch-Chr9:21596402 | Mch6g0266 | Mch-Chr6:1742632 | 2.67E-06 | dispersed | |
| Mch3g1319 | Mch-Chr3:15993931 | Mch9g2038 | Mch-Chr9:21596402 | 5.42E-37 | transposed | |
| Mch4g1534 | Mch-Chr4:18722502 | Mch9g2038 | Mch-Chr9:21596402 | 2.63E-125 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44110 | PF00010 | HLH | 6.10E-06 | No_clan | Mch | TF |
Pathway information