Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2038 ATGGATATTGGTGACACAGATAAATTTAGACTAGAAAGTAGCACAGGGGATTCTATTAACTATTCACATAGCATGTCTTCGGACTGGCGATTTGGCGAGACGACTCTCATGAATATTCCGATGGGTTTGGTTTTGCCAGGGAATGTGGATGTAATTAGGAATCAGGATATGGTCGGTTGTTCTTCTTCCACTGCTCCTGTAGTAGAGCCATTCAGCTCTACCATTTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCGAGACCAGAACAACTGCAGTACTTCTTCAAACACCATAGCAATTAGCAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGACAGAACACTTGACATCAGCTGGAACCTATCACATTCTAGGTTGAAAGGAGGAGTTTACCTACCAAATATTCCCGGTCCGCTCCCACCGAGCTTATCTCAACTTCCAGCCGATTCTTCATTTATCGAGCGTGCAGCCAGGCTCTCATGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAACATTCCTGAGCCTATGTGTGCTTTTTCTAGAGGCATGGGAGTAATACCGGAGAGAAGGGATAATATTTCTCGAAATGGGTTAGTATCTGAAACTGGAGGACAATCTCAAAGAAACATGGTTGACAGTAGTGAAGCTTCCAAACCTGTTTCTTTGACTAATGAACATGGAGCTACTGGAAGGACTTTGCCAGAAAGTGAAAGCCCTTTGAAATTGAATGATCGTGGTAAACTTGCCATTGATGGGTCTGCTAATGATTCTGATAAAGCTGAGTTTAGCAGTGGTGATGGTTCTGGTGAGCCTTGTATGTTGGAGGTTACAGGTAAGGAACTTTCTGCCAAGGGCTTCGGCTCAAGGAAAAGGAAAAGGACTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAAATGGTGTTTCAGCTAAAGATAATATCGATACTCAGCGGAAGGGAGATCAAAATCCAAGTTCAACCACAAACAAGGGTACAGTAAAACATGGTAAACAGGCACCTCAACCTTCAGATCCGCCAAAGGAAGAATATATTCATGTTAGAGCTCGGAGGGGCCAGGCGACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATTAGTGAGAGGATGAAGTTCCTTCAAGAACTAGTCCCCGGTTGCAGCAAGGTTACTGGCAAGGCAGTTATGCTAGACGAAATCATAAACTACGTCCAATCGCTGCAACGACAAGTTGAGTTTTTATCAATGAAACTCGCTACTGTTAATCCAAGGTTGGATATCAACATTGATGGACTCCTAGCCAAAGATATTCTTCAATCACGAGCTGGTCCATCGTCGGGATTTTCTTCACATATGCCCATTACGGGTCCCCTGCCAAGTATTTCTCATCATGGACTTATCCCAAGCAGTTTTCCTGCCATAGGGAGCTGTGAGATGTTAAGAAGCACAATAAATTCCCAGATGACTCCAATGTCCGGTGGATTTAAGGAGCGTACTCAGATAAAGAATGTGTGGGATGGTGAACTTCAAAACATTGTGCAGATGAGCTTTGGGATGTCTACTCCCCCCAGTTGTTTAGAAATTGATGGTACA 1647 43.9 MDIGDTDKFRLESSTGDSINYSHSMSSDWRFGETTLMNIPMGLVLPGNVDVIRNQDMVGCSSSTAPVVEPFSSTIWEQAANCQNLGICNIRDQNNCSTSSNTIAISKASGCPVSLSSDIDRTLDISWNLSHSRLKGGVYLPNIPGPLPPSLSQLPADSSFIERAARLSCFSGGNFGDIVGHFNIPEPMCAFSRGMGVIPERRDNISRNGLVSETGGQSQRNMVDSSEASKPVSLTNEHGATGRTLPESESPLKLNDRGKLAIDGSANDSDKAEFSSGDGSGEPCMLEVTGKELSAKGFGSRKRKRTGQKTELDQANGPLQQNGVSAKDNIDTQRKGDQNPSSTTNKGTVKHGKQAPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLLAKDILQSRAGPSSGFSSHMPITGPLPSISHHGLIPSSFPAIGSCEMLRSTINSQMTPMSGGFKERTQIKNVWDGELQNIVQMSFGMSTPPSCLEIDGT 549
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 21596402 21598729 + MC09g1587 Mch9g2038 698920
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2038 549 Gene3D - 372 445 IPR036638 GO:0046983(InterPro)
Mch9g2038 549 MobiDBLite consensus disorder prediction 311 352 - -
Mch9g2038 549 Pfam Helix-loop-helix DNA-binding domain 378 426 IPR011598 GO:0046983(InterPro)
Mch9g2038 549 MobiDBLite consensus disorder prediction 208 243 - -
Mch9g2038 549 SMART finulus 381 431 IPR011598 GO:0046983(InterPro)
Mch9g2038 549 MobiDBLite consensus disorder prediction 207 363 - -
Mch9g2038 549 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 151 535 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch9g2038 549 MobiDBLite consensus disorder prediction 296 310 - -
Mch9g2038 549 CDD bHLH_AtBPE_like 365 450 - -
Mch9g2038 549 FunFam Basic helix-loop-helix transcription factor 372 444 - -
Mch9g2038 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 443 IPR036638 GO:0046983(InterPro)
Mch9g2038 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1111 Mch-Chr2:7534378 Mch9g2038 Mch-Chr9:21596402 3.39E-39 dispersed
Mch6g0383 Mch-Chr6:2538331 Mch9g2038 Mch-Chr9:21596402 5.26E-30 dispersed
Mch9g1063 Mch-Chr9:9814014 Mch9g2038 Mch-Chr9:21596402 1.40E-40 dispersed
Mch9g2038 Mch-Chr9:21596402 Mch6g0266 Mch-Chr6:1742632 2.67E-06 dispersed
Mch3g1319 Mch-Chr3:15993931 Mch9g2038 Mch-Chr9:21596402 5.42E-37 transposed
Mch4g1534 Mch-Chr4:18722502 Mch9g2038 Mch-Chr9:21596402 2.63E-125 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44110 PF00010 HLH 6.10E-06 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2038 - - - 0.0