Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2062 ATGAGCTCCGAAGACTCCAAAACTTCCATGGATTTGGTTCAGCCCTCTGAGCACCTCTGTTATGTGAGATGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGCTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAACCTTTCATTTTTGAGCACGAGGCCGCCATTGCAAGGCCAATGCATTGATCATCCTCTGGGTTTTCAGACGCAGGTGGGATTCTCCAATGATATTCGAAAGGGTGCATCGACATCGTCCACATCGACATCGTCTTCAATGGCGAATGAGTCTCCCTCTCCAAGTTTTGTTGTGAAACCCCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCACATCGAGAAGCATTCAGTGCAGCAGCAAAGAACTGGGCAAGGTACATTCCGAATTCAGCTGCGGGGTCGGTTTCGGGTACTCACAACAATGAATGA 522 47.32 MSSEDSKTSMDLVQPSEHLCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLGFQTQVGFSNDIRKGASTSSTSTSSSMANESPSPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21735622 21737738 - MC09g1607 Mch9g2062 698944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2062 173 Pfam YABBY protein 15 157 IPR006780 GO:0007275(InterPro)
Mch9g2062 173 CDD HMG-box_SF 118 154 - -
Mch9g2062 173 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Mch9g2062 173 MobiDBLite consensus disorder prediction 85 116 - -
Mch9g2062 173 MobiDBLite consensus disorder prediction 85 105 - -
Mch9g2062 173 SUPERFAMILY HMG-box 104 155 IPR036910 -
Mch9g2062 173 Gene3D High mobility group box domain 105 159 IPR036910 -
Mch9g2062 173 FunFam protein CRABS CLAW isoform X3 109 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2062 K25796 - - csv:101219863 295.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3074 Mch-Chr8:33217996 Mch9g2062 Mch-Chr9:21735622 5.82E-37 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch9g2254 Mch-Chr9:22896056 3.12E-28 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch6g1777 Mch-Chr6:20335000 3.30E-38 transposed
Mch9g2062 Mch-Chr9:21735622 Mch6g0711 Mch-Chr6:4887665 9.75E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44111 PF04690 YABBY 3.40E-54 CL0114 Mch TF