Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2093 ATGTCCGACGAGGAGCATCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCCGGGACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCTAAGACTGGAAAGCACGGCCATGCTAAATGTCACTTTGTTGGAATTGACATTTTCACTACTAAAAAGCTGGAAGATATCGTCCCCTCTTCCCACAACTGTGACGTTCCCCATGTCAGTCGCACTGACTACCAGCTCATTGATATCTCTGAAGACGGATTTATTAGCCTGCTAACGGACAGTGGTAGCACCAAAGATGACCTGAGGCTTCCAACCGATGAGAGTCTTCTGTCCCAGATCAAGGATGGATTTAATGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATTTGCGCTCTCAAGGACATTGGCCCGAAATAG 480 48.75 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTTKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTDESLLSQIKDGFNEGKDLIVTVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21923517 21925829 + MC09g1636 Mch9g2093 698975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2093 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch9g2093 159 MobiDBLite consensus disorder prediction 1 21 - -
Mch9g2093 159 Gene3D - 1 85 IPR014722 -
Mch9g2093 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch9g2093 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Mch9g2093 159 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Mch9g2093 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Mch9g2093 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch9g2093 159 Gene3D - 86 158 IPR012340 -
Mch9g2093 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch9g2093 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch9g2093 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Mch9g2093 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch9g2093 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Mch9g2093 159 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0624 Mch-Chr6:4221727 Mch9g2093 Mch-Chr9:21923517 1.29E-103 dispersed
Mch8g0500 Mch-Chr8:3544230 Mch9g2093 Mch-Chr9:21923517 1.97E-102 dispersed
Mch9g2093 Mch-Chr9:21923517 Mch11g0503 Mch-Chr11:3184914 8.03E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2093 K03263 - csv:101214693 312.768