Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2095 ATTATGGGTGATGATGAAGAAGAACAGCCACCGAATTCGCCGCCGCCGAAGTCCAAGGCCGTTCTGTCGCGGCCCACTATTAATCTCCCGCCACGGACTTCTATGGAGTCGTTCTTCGGTGGGCCGGGTTTCGGATTCGGGTTTAGCCCAGGCCCCATGACGCTCGTCTCGAGCTTCTTCTCCGATTCCGACGACTGCAAGTCTTTCTCTCAGCTCCTTGCCGGAGCCATGGCCTCGCCGGTGGCAGTTCCTCCCCACGCTCCGACGGCGCTTGAGCTCAAGGGCTCAGCCGGTCTGGATTCTGCGGGACTATTTTCTCCCGGTCAGGGACCTTTTGGAATGACGCATCAGCAGGCTTTGGCACAGGTTACCATGCAGGCTGCACAAACCTATTCTCATAAGCAAATGGAAGCAGAATCTTTTTCTTCATCGGTAGCACCCGCTGCATCCGCAGAGCTTTCAGCGACATTTCCTGGCGAGAAAACTAAAGATCAGCTGATGCAACCTCCACTACTGAACTCTGCAGTTGCTACCACGGAGTCATTGGATATCTCTCAATCAGATCAGAGATTGCCACCTTCTTCGTGTAATGTCGATAGGCCTGCTAATGACGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTATTATAAGTGCACACATCTGAATTGTCCTGTGAAGAAAAAGGTTGAACGATCTCTGGAAGGCCAGGTTACTGAAATTATCTACAAAGGTGAGCACAACCATGAACGACCTCAACTGAATAAGCGAGCGAAGGATGTCGGTAATTCTAACGGATATTCAAGTTTTCCTGGAAATCCTGAGCTATCTTCTCAACTTCAAAGTGGATATTTGAACAAATCGAATGAGCAGACAGCTGTGTCTTCTATTGCAAAGAAAGATCAGGATTCAAGCCTTGTTACACATGAACAGTTATCTGGTACTAGTGATGGTGAGGGATTGAGTGAGATAGAAACTGGAGTGAATCAAAAAGATGAAGACGAGCCCGATGCCAAGAGACGGAATACTGAGGTTAGAGTTTCAGAGCCAGCATCTTCCCATAGGACCCTCACGGAATCCAGAATCATTGTGCAGACCACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGGAAGTACGGGCAGAAAATTGTTAAAGGCAATCCTTACCCCAGGAGCTATTATAAATGCACGACTCCGGGATGCAATGTTCGTAAACATGTTGAGAGAGCTTCAACAGACCCAAAAGCTGTAGTAACAACGTACGAGGGTAAACACAATCACGATGTTCCAGCCGGTAGAACCACCAGCCACAGTACATTCAACAGCAACGTTCCTCACCTAAAATCACAAAGTATGGTTACTGAGAAAAGATTTTCAAGTAAGAACACTGATTCCGGGAACTCACGTCAACAGCCTGTTGGACTTCTACGGTTAAAGGAAGAACAAATAACATAG 1491 47.62 IMGDDEEEQPPNSPPPKSKAVLSRPTINLPPRTSMESFFGGPGFGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPPHAPTALELKGSAGLDSAGLFSPGQGPFGMTHQQALAQVTMQAAQTYSHKQMEAESFSSSVAPAASAELSATFPGEKTKDQLMQPPLLNSAVATTESLDISQSDQRLPPSSCNVDRPANDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERSLEGQVTEIIYKGEHNHERPQLNKRAKDVGNSNGYSSFPGNPELSSQLQSGYLNKSNEQTAVSSIAKKDQDSSLVTHEQLSGTSDGEGLSEIETGVNQKDEDEPDAKRRNTEVRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVVTTYEGKHNHDVPAGRTTSHSTFNSNVPHLKSQSMVTEKRFSSKNTDSGNSRQQPVGLLRLKEEQIT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21929943 21933268 + MC09g1638 Mch9g2095 698977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2095 496 MobiDBLite consensus disorder prediction 444 484 - -
Mch9g2095 496 ProSiteProfiles WRKY domain profile. 203 261 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 MobiDBLite consensus disorder prediction 180 196 - -
Mch9g2095 496 MobiDBLite consensus disorder prediction 1 34 - -
Mch9g2095 496 MobiDBLite consensus disorder prediction 253 289 - -
Mch9g2095 496 MobiDBLite consensus disorder prediction 437 496 - -
Mch9g2095 496 Gene3D WRKY domain 194 262 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 Gene3D WRKY domain 367 443 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 FunFam WRKY transcription factor 33 369 435 - -
Mch9g2095 496 Pfam WRKY DNA -binding domain 383 440 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 Pfam WRKY DNA -binding domain 203 259 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 SMART WRKY_cls 202 260 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 SMART WRKY_cls 382 441 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 MobiDBLite consensus disorder prediction 267 289 - -
Mch9g2095 496 SUPERFAMILY WRKY DNA-binding domain 374 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 MobiDBLite consensus disorder prediction 180 202 - -
Mch9g2095 496 FunFam WRKY transcription factor 190 262 - -
Mch9g2095 496 MobiDBLite consensus disorder prediction 335 357 - -
Mch9g2095 496 SUPERFAMILY WRKY DNA-binding domain 201 261 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 ProSiteProfiles WRKY domain profile. 377 442 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2095 496 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 128 462 IPR044810 GO:0003700(InterPro)
Mch9g2095 496 MobiDBLite consensus disorder prediction 303 332 - -
Mch9g2095 496 MobiDBLite consensus disorder prediction 303 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2124 Mch-Chr8:24315307 Mch9g2095 Mch-Chr9:21929943 6.11E-26 dispersed
Mch9g0642 Mch-Chr9:4818780 Mch9g2095 Mch-Chr9:21929943 1.40E-26 dispersed
Mch9g1377 Mch-Chr9:16164301 Mch9g2095 Mch-Chr9:21929943 1.31E-14 dispersed
Mch3g0043 Mch-Chr3:448332 Mch9g2095 Mch-Chr9:21929943 9.27E-76 transposed
Mch5g1794 Mch-Chr5:18354580 Mch9g2095 Mch-Chr9:21929943 1.15E-64 transposed
Mch6g0623 Mch-Chr6:4214812 Mch9g2095 Mch-Chr9:21929943 2.21E-46 transposed
Mch6g1412 Mch-Chr6:12571243 Mch9g2095 Mch-Chr9:21929943 3.39E-72 transposed
Mch4g2348 Mch-Chr4:24759190 Mch9g2095 Mch-Chr9:21929943 2.10E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44113 PF03106 WRKY 9.90E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2095 - - - 0.0