Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2116 ATGGCTTCTGTACTTTTATTTTTGGCGGGGTTTTATGCCATGGTTTCCTCTGCTGATGCCTATGCAGGAGGAGGGTGGACTAGCGCCCACGCTACGTTCTACGGTGGGAGTGATGCCTCTGGGACAATGGGTGGGGCTTGTGGGTATGGTAATTTATACAGTCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAATAATGGCTTGAGCTGCGGCTCTTGCTATGAGATTAGGTGCGCGAGTGACCCTAAATGGTGCCTGCCGGGTTCTATTGTGGTCACGGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACAACGGAGGATGGTGCAACCCTCCTCTACAGCACTTTGATCTCTCCCAGCCCGTCTTCCAACACATTGCCCAATACAGAGCAGGAATTGTGCCCGTCGCCTACAGAAGGGTACCCTGCGGGAGACGGGGAGGCATAAGGTTCACCATCAATGGCCATTCCTACTTCAACCTGGTGCTCATCACAAACGTTGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGGTCAAGAACTGGCTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAACGGCCAGAGCCTCTCCTTCAAGGTCACCACCAGCGACGGGCGCACAGTCGTCTCCAACAACGTCGTCCCCGCCCGCTGGTCCTTCGGCCAGACTTACAGTGGTGCCCAATTCTGA 747 54.22 MASVLLFLAGFYAMVSSADAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNNGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVVSNNVVPARWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22063783 22065791 + MC09g1657 Mch9g2116 698998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2116 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Mch9g2116 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Mch9g2116 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Mch9g2116 248 Gene3D - 155 248 IPR036749 -
Mch9g2116 248 CDD DPBB_EXPA_N 25 151 - -
Mch9g2116 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Mch9g2116 248 Gene3D - 12 151 IPR036908 -
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Mch9g2116 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Mch9g2116 248 SUPERFAMILY Barwin-like endoglucanases 9 174 IPR036908 -
Mch9g2116 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Mch9g2116 248 SMART dpbb_1 61 146 IPR007112 -
Mch9g2116 248 FunFam Expansin 156 248 - -
Mch9g2116 248 FunFam Expansin 15 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1100 Mch-Chr10:8120331 Mch9g2116 Mch-Chr9:22063783 4.03E-84 dispersed
Mch1g0714 Mch-Chr1:11069378 Mch9g2116 Mch-Chr9:22063783 8.33E-130 dispersed
Mch4g2463 Mch-Chr4:25504783 Mch9g2116 Mch-Chr9:22063783 5.30E-145 dispersed
Mch8g2415 Mch-Chr8:27193490 Mch9g2116 Mch-Chr9:22063783 1.30E-93 dispersed
Mch8g2460 Mch-Chr8:27539492 Mch9g2116 Mch-Chr9:22063783 5.85E-148 dispersed
Mch9g1387 Mch-Chr9:16250690 Mch9g2116 Mch-Chr9:22063783 6.77E-147 dispersed
Mch9g1554 Mch-Chr9:17825037 Mch9g2116 Mch-Chr9:22063783 1.34E-130 dispersed
Mch8g0869 Mch-Chr8:6201602 Mch9g2116 Mch-Chr9:22063783 1.07E-68 transposed
Mch3g1733 Mch-Chr3:18778987 Mch9g2116 Mch-Chr9:22063783 2.78E-129 wgd
Mch4g2319 Mch-Chr4:24548151 Mch9g2116 Mch-Chr9:22063783 1.39E-140 wgd
Mch6g0242 Mch-Chr6:1592357 Mch9g2116 Mch-Chr9:22063783 3.79E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2116 - - - 0.0