Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2134 CCACCCATGGAATTAGCCTCCTCTTCTTCAATCCCACAACCCATGCTCACGCTCACCTCCTACAGAGAATGCCTCAAGAACCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTCACTAACCGCCACCCCCGCCGATCCCACCTCTCTAAACTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGAGAACCCGACGATCCCTGGCCAAACCTCGCCGCCCACCGCCGTTACCCTTACCACTCTCATGGGCTCTCAAGCCCGAGCCCAAACAAGGCCCAAAGCCCATCCTCGCCGGTCCCTTTACCAATTTCGCACATACCGCCCCCGCTCCACTTCTCGGCCCCCCACATGTTGCTGGCATTGAGCACCGGAGCGCCACCGGACGACCGCCGTGGCGATCAATTGACATTGAGCCCAAAAGAGAGGAAGAGAAAGAGGACCAAATTCAGCGTGGAGCAGAAGGAGAAGATGTACTTATTCTCGGAGAAAATGGGATGGAAAATTCGCAAAAGTGACGAGAGGTTAGTGGAGGAATTCTGCAATGAAATTGGGATCGGGAAGCGGGTGCTCAGAGTTTGGATGCACAATAACAAA 621 57.33 PPMELASSSSIPQPMLTLTSYRECLKNHAATVGGHALDGCGEFMPSLTATPADPTSLNCAACGCHRNFHRREPDDPWPNLAAHRRYPYHSHGLSSPSPNKAQSPSSPVPLPISHIPPPLHFSAPHMLLALSTGAPPDDRRGDQLTLSPKERKRKRTKFSVEQKEKMYLFSEKMGWKIRKSDERLVEEFCNEIGIGKRVLRVWMHNNK 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22139627 22140247 + MC09g1673 Mch9g2134 699016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2134 207 MobiDBLite consensus disorder prediction 129 157 - -
Mch9g2134 207 NCBIfam homeobox domain, ZF-HD class 151 207 IPR006455 -
Mch9g2134 207 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 72 IPR006456 -
Mch9g2134 207 MobiDBLite consensus disorder prediction 142 157 - -
Mch9g2134 207 Gene3D - 138 207 - -
Mch9g2134 207 MobiDBLite consensus disorder prediction 88 115 - -
Mch9g2134 207 SUPERFAMILY Homeodomain-like 141 207 IPR009057 -
Mch9g2134 207 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 207 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch9g2134 207 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Mch9g2134 207 Pfam ZF-HD protein dimerisation region 20 73 IPR006456 -
Mch9g2134 207 ProSiteProfiles 'Homeobox' domain profile. 149 207 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0775 Mch-Chr8:5475107 Mch9g2134 Mch-Chr9:22139627 1.60E-42 dispersed
Mch8g1659 Mch-Chr8:14154607 Mch9g2134 Mch-Chr9:22139627 1.03E-50 transposed
Mch3g1742 Mch-Chr3:18828988 Mch9g2134 Mch-Chr9:22139627 2.50E-17 wgd
Mch4g2303 Mch-Chr4:24466624 Mch9g2134 Mch-Chr9:22139627 1.36E-16 wgd
Mch6g0231 Mch-Chr6:1548164 Mch9g2134 Mch-Chr9:22139627 4.85E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44120 PF04770 ZF-HD_dimer 2.20E-28 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2134 - - - 0.0