Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2134 CCACCCATGGAATTAGCCTCCTCTTCTTCAATCCCACAACCCATGCTCACGCTCACCTCCTACAGAGAATGCCTCAAGAACCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTCACTAACCGCCACCCCCGCCGATCCCACCTCTCTAAACTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGAGAACCCGACGATCCCTGGCCAAACCTCGCCGCCCACCGCCGTTACCCTTACCACTCTCATGGGCTCTCAAGCCCGAGCCCAAACAAGGCCCAAAGCCCATCCTCGCCGGTCCCTTTACCAATTTCGCACATACCGCCCCCGCTCCACTTCTCGGCCCCCCACATGTTGCTGGCATTGAGCACCGGAGCGCCACCGGACGACCGCCGTGGCGATCAATTGACATTGAGCCCAAAAGAGAGGAAGAGAAAGAGGACCAAATTCAGCGTGGAGCAGAAGGAGAAGATGTACTTATTCTCGGAGAAAATGGGATGGAAAATTCGCAAAAGTGACGAGAGGTTAGTGGAGGAATTCTGCAATGAAATTGGGATCGGGAAGCGGGTGCTCAGAGTTTGGATGCACAATAACAAA 621 57.33 PPMELASSSSIPQPMLTLTSYRECLKNHAATVGGHALDGCGEFMPSLTATPADPTSLNCAACGCHRNFHRREPDDPWPNLAAHRRYPYHSHGLSSPSPNKAQSPSSPVPLPISHIPPPLHFSAPHMLLALSTGAPPDDRRGDQLTLSPKERKRKRTKFSVEQKEKMYLFSEKMGWKIRKSDERLVEEFCNEIGIGKRVLRVWMHNNK 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22139627 22140247 + MC09g1673 Mch9g2134 699016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2134 207 MobiDBLite consensus disorder prediction 129 157 - -
Mch9g2134 207 NCBIfam homeobox domain, ZF-HD class 151 207 IPR006455 -
Mch9g2134 207 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 72 IPR006456 -
Mch9g2134 207 MobiDBLite consensus disorder prediction 142 157 - -
Mch9g2134 207 Gene3D - 138 207 - -
Mch9g2134 207 MobiDBLite consensus disorder prediction 88 115 - -
Mch9g2134 207 SUPERFAMILY Homeodomain-like 141 207 IPR009057 -
Mch9g2134 207 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 207 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch9g2134 207 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Mch9g2134 207 Pfam ZF-HD protein dimerisation region 20 73 IPR006456 -
Mch9g2134 207 ProSiteProfiles 'Homeobox' domain profile. 149 207 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2134 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0775 Mch-Chr8:5475107 Mch9g2134 Mch-Chr9:22139627 1.60E-42 dispersed
Mch8g1659 Mch-Chr8:14154607 Mch9g2134 Mch-Chr9:22139627 1.03E-50 transposed
Mch3g1742 Mch-Chr3:18828988 Mch9g2134 Mch-Chr9:22139627 2.50E-17 wgd
Mch4g2303 Mch-Chr4:24466624 Mch9g2134 Mch-Chr9:22139627 1.36E-16 wgd
Mch6g0231 Mch-Chr6:1548164 Mch9g2134 Mch-Chr9:22139627 4.85E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44120 PF04770 ZF-HD_dimer 2.20E-28 No_clan Mch TF