Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2143 AGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGATCACGAAGAACATCCATGTTCCACCTCCGCAAACAACGGAACTACTACCACAACTTCCACTACCACAATTCCAAATCAAAATCTTGAAGATCTTCATCCCCTAGTACCCACCAAGAAGGCACCTCCCAAAAGGGCCACCACCAAAGACCGCCATACCAAAGTTGACGGCCGGGGCCGCCGGATCCGGATGCCAGCCCTTTGCGCTGCTAGGGTTTTCCAGCTCACTCGAGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCGGTCATCGCCGCCACCGGGACTGGTACCATCCCTGCCAACTTCACCTCCCTTAACATCTCCCTCCGTAGCTCCGGCTCCACCATCTCTGCCCCTTCGCACTTGCGCGGTAGCTACTTCAGCCCCGCGCAGTTCGCCCTCCGAACCCGCTCCGATATCTGGGACCGGAGCAATACTAGTTGTAACAACAACAATAATCTCCTCGTCGACGACTCCTCCTCCCCTTTCTTCAACTTCAATTCCCCTAATTATGTCAGCGCCTTCAAGCACGATCATCACTCCGGGGTCGACCTTGCTGACGCTGCCAAAAAACGCCGCTCCGACCACTCCGAATCCTCGGAGACTAATCAGTATTTCGTGCAGTCGAGCGCCGGGTCGATCCCGGCGACGAACAGCACGCCGGCTCCGGCCACATTTTGGATGGTGACGAATCCGAGCAGCCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGCAGCACGAGCATGTTTAGGGGACAGTCGGTTGCCGGTGGCGGAGGGTTTCATTTCATGAACATTCCACCGCCCATGGCTCTTTTGCCGACGGCCCAGCAGGTGGGGTCGGGAATCGGGAGCGGCGGCGGTCCGGTCACCGTCACCGACAGCCATTTGGGGATGTTGGCGGCTCTTAGTGCTTACAGAAGCATGCCCGGATTATCAGTTTCTGAATCTCCAACACGAGCTGTACATCAAGCTGCTGGAAATGATGGCCATGACTCAACTTCTAAT 1083 56.23 RPNFPLQLLEKKEDHEEHPCSTSANNGTTTTTSTTTIPNQNLEDLHPLVPTKKAPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRGSYFSPAQFALRTRSDIWDRSNTSCNNNNNLLVDDSSSPFFNFNSPNYVSAFKHDHHSGVDLADAAKKRRSDHSESSETNQYFVQSSAGSIPATNSTPAPATFWMVTNPSSQASDPMWTFPSVSSTSMFRGQSVAGGGGFHFMNIPPPMALLPTAQQVGSGIGSGGGPVTVTDSHLGMLAALSAYRSMPGLSVSESPTRAVHQAAGNDGHDSTSN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22181244 22182326 + MC09g1681 Mch9g2143 699025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2143 361 MobiDBLite consensus disorder prediction 1 69 - -
Mch9g2143 361 Pfam TCP family transcription factor 60 197 IPR017887 -
Mch9g2143 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 331 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch9g2143 361 MobiDBLite consensus disorder prediction 21 42 - -
Mch9g2143 361 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Mch9g2143 361 MobiDBLite consensus disorder prediction 338 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2143 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1635 Mch-Chr4:19547238 Mch9g2143 Mch-Chr9:22181244 2.70E-33 dispersed
Mch7g0051 Mch-Chr7:506676 Mch9g2143 Mch-Chr9:22181244 5.94E-33 dispersed
Mch8g1386 Mch-Chr8:10294117 Mch9g2143 Mch-Chr9:22181244 1.44E-36 dispersed
Mch9g1660 Mch-Chr9:18669790 Mch9g2143 Mch-Chr9:22181244 2.28E-32 dispersed
Mch9g2143 Mch-Chr9:22181244 Mch9g2397 Mch-Chr9:23740892 1.65E-42 dispersed
Mch10g0196 Mch-Chr10:1172822 Mch9g2143 Mch-Chr9:22181244 2.40E-31 transposed
Mch7g0736 Mch-Chr7:11961125 Mch9g2143 Mch-Chr9:22181244 8.60E-35 transposed
Mch3g1754 Mch-Chr3:18879542 Mch9g2143 Mch-Chr9:22181244 6.98E-48 wgd
Mch6g0228 Mch-Chr6:1519570 Mch9g2143 Mch-Chr9:22181244 1.34E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44122 PF03634 TCP 1.00E-37 No_clan Mch TF