Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2143 AGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGATCACGAAGAACATCCATGTTCCACCTCCGCAAACAACGGAACTACTACCACAACTTCCACTACCACAATTCCAAATCAAAATCTTGAAGATCTTCATCCCCTAGTACCCACCAAGAAGGCACCTCCCAAAAGGGCCACCACCAAAGACCGCCATACCAAAGTTGACGGCCGGGGCCGCCGGATCCGGATGCCAGCCCTTTGCGCTGCTAGGGTTTTCCAGCTCACTCGAGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCGGTCATCGCCGCCACCGGGACTGGTACCATCCCTGCCAACTTCACCTCCCTTAACATCTCCCTCCGTAGCTCCGGCTCCACCATCTCTGCCCCTTCGCACTTGCGCGGTAGCTACTTCAGCCCCGCGCAGTTCGCCCTCCGAACCCGCTCCGATATCTGGGACCGGAGCAATACTAGTTGTAACAACAACAATAATCTCCTCGTCGACGACTCCTCCTCCCCTTTCTTCAACTTCAATTCCCCTAATTATGTCAGCGCCTTCAAGCACGATCATCACTCCGGGGTCGACCTTGCTGACGCTGCCAAAAAACGCCGCTCCGACCACTCCGAATCCTCGGAGACTAATCAGTATTTCGTGCAGTCGAGCGCCGGGTCGATCCCGGCGACGAACAGCACGCCGGCTCCGGCCACATTTTGGATGGTGACGAATCCGAGCAGCCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGCAGCACGAGCATGTTTAGGGGACAGTCGGTTGCCGGTGGCGGAGGGTTTCATTTCATGAACATTCCACCGCCCATGGCTCTTTTGCCGACGGCCCAGCAGGTGGGGTCGGGAATCGGGAGCGGCGGCGGTCCGGTCACCGTCACCGACAGCCATTTGGGGATGTTGGCGGCTCTTAGTGCTTACAGAAGCATGCCCGGATTATCAGTTTCTGAATCTCCAACACGAGCTGTACATCAAGCTGCTGGAAATGATGGCCATGACTCAACTTCTAAT 1083 56.23 RPNFPLQLLEKKEDHEEHPCSTSANNGTTTTTSTTTIPNQNLEDLHPLVPTKKAPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRGSYFSPAQFALRTRSDIWDRSNTSCNNNNNLLVDDSSSPFFNFNSPNYVSAFKHDHHSGVDLADAAKKRRSDHSESSETNQYFVQSSAGSIPATNSTPAPATFWMVTNPSSQASDPMWTFPSVSSTSMFRGQSVAGGGGFHFMNIPPPMALLPTAQQVGSGIGSGGGPVTVTDSHLGMLAALSAYRSMPGLSVSESPTRAVHQAAGNDGHDSTSN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22181244 22182326 + MC09g1681 Mch9g2143 699025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2143 361 MobiDBLite consensus disorder prediction 1 69 - -
Mch9g2143 361 Pfam TCP family transcription factor 60 197 IPR017887 -
Mch9g2143 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 331 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch9g2143 361 MobiDBLite consensus disorder prediction 21 42 - -
Mch9g2143 361 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Mch9g2143 361 MobiDBLite consensus disorder prediction 338 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1635 Mch-Chr4:19547238 Mch9g2143 Mch-Chr9:22181244 2.70E-33 dispersed
Mch7g0051 Mch-Chr7:506676 Mch9g2143 Mch-Chr9:22181244 5.94E-33 dispersed
Mch8g1386 Mch-Chr8:10294117 Mch9g2143 Mch-Chr9:22181244 1.44E-36 dispersed
Mch9g1660 Mch-Chr9:18669790 Mch9g2143 Mch-Chr9:22181244 2.28E-32 dispersed
Mch9g2143 Mch-Chr9:22181244 Mch9g2397 Mch-Chr9:23740892 1.65E-42 dispersed
Mch10g0196 Mch-Chr10:1172822 Mch9g2143 Mch-Chr9:22181244 2.40E-31 transposed
Mch7g0736 Mch-Chr7:11961125 Mch9g2143 Mch-Chr9:22181244 8.60E-35 transposed
Mch3g1754 Mch-Chr3:18879542 Mch9g2143 Mch-Chr9:22181244 6.98E-48 wgd
Mch6g0228 Mch-Chr6:1519570 Mch9g2143 Mch-Chr9:22181244 1.34E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44122 PF03634 TCP 1.00E-37 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2143 - - - 0.0