Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2152 ATGACAAGTAATGGGATGGCCTTCTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCACGATCACCACCACTCCTCTCCTCCCTCTCTCAACCCAATTCTTCCTTCTTGCACACCCCAAGATTTTCATGGAGTGGCATCATTTCTAGGGAAACGATCCATGTCATTCTCAGGGGCGGAGATGGTGGAAGAAGGGAATAATGGAGAGGATGAGTTTTCTGATGATGGGTCACAGGCAGGGGAGAAGAAGAGGAGACTTAATATGGAGCAAGTTAAAACACTTGAGAAGAATTTCGAATTGGGGAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCACGAGCTCTTGGGCTACAGCCGAGGCAGATTGCTATTTGGTTTCAGAACAGAAGGGCTAGATGGAAGACTAAGCAGCTCGAAAAAGACTACGACCTCCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAGTCCCAAAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATAAAATTGGACATCTCAAGAACACCTGCCATTGACAGCCCTCACCAGCATCAGCATCAGCACCACCAGCCAACAAATAGGCCTCTTTTTCCCTCTTCTTCCCTAAGGCCTCCAGCGCTGGCTCAGCTGTTTCAGACCTCATCCAGATCAGACCCAACAAAGCTTGAAAACCATCATAATCATAATCATAATCAGATGCCCAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGGATGGATGACCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 909 45.87 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHHQPTNRPLFPSSSLRPPALAQLFQTSSRSDPTKLENHHNHNHNQMPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22247913 22250230 + MC09g1689 Mch9g2152 699034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2152 302 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677(InterPro)
Mch9g2152 302 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677(InterPro)
Mch9g2152 302 Gene3D - 76 145 - -
Mch9g2152 302 SMART HOX_1 82 143 IPR001356 GO:0003677(InterPro)
Mch9g2152 302 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Mch9g2152 302 Pfam Homeodomain 84 137 IPR001356 GO:0003677(InterPro)
Mch9g2152 302 MobiDBLite consensus disorder prediction 253 280 - -
Mch9g2152 302 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g2152 302 CDD homeodomain 84 140 IPR001356 GO:0003677(InterPro)
Mch9g2152 302 MobiDBLite consensus disorder prediction 180 240 - -
Mch9g2152 302 Coils Coil 131 179 - -
Mch9g2152 302 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Mch9g2152 302 MobiDBLite consensus disorder prediction 257 271 - -
Mch9g2152 302 MobiDBLite consensus disorder prediction 187 209 - -
Mch9g2152 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 288 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Mch9g2152 302 MobiDBLite consensus disorder prediction 62 84 - -
Mch9g2152 302 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Mch9g2152 302 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1526 Mch-Chr8:11895404 Mch9g2152 Mch-Chr9:22247913 4.54E-25 dispersed
Mch9g2152 Mch-Chr9:22247913 Mch9g2169 Mch-Chr9:22368225 3.09E-19 dispersed
Mch4g2291 Mch-Chr4:24361379 Mch9g2152 Mch-Chr9:22247913 4.14E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44124 PF00046 Homeodomain 3.00E-15 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2152 K09338 - csv:101221595 511.146