Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2162 CTGCTACTGACCTTGTCCATGGCGGCAGTCGCAAATTCCGGCATCGCAGACTTCGACGATTTCTGGAAAAAACGCGCCGTCGAAGCCCAAGAAGCCGCCGCCGAGGCCTACGAACCCAATCCCGAGAAAATCACCGACTCCATCAACGAGGAAGTTGGCGAGCTGTTGGCGGGAAGCAACAGAACCGGGAGGAATTTGAATTCGAAGAAATACCGTGGCCCATGCCGCGCCACTAACCCCATCGACCGGTGCTGGAGATGCAACCCCAATTGGGCGGCCAACCGCAAGAAATTGGCCGATTGCGTTCTGGGTTTCGGCCGGAGAACGATCGGCGGTAAGATGGGGCCGTACTACTTGGTCAACGATTCGTCGGACTCGGACCTCATGAACCCGAAACCCGGAACCCTCCGACACGCGGTGATCCAAAAGGGACCGCTGTGGATCATCTTCGGTAGCAATATGGCGATTCGGCTGACTCAGGAGCTGATCATGACCAGCGACAAGACCATCGATGCAAGAGGGGCCAATGTCCAAATCGCTTTCGGGGCCGGAATTACCATTCAGTACGTGAAGAATGTGATCATCCATGGGCTTCGTATCCATCACATCGTGGTCGGCACCGGCGGAATGGTCAGAGACTCGGTTGACCATGTGGGGTTGAGGACAATGAGCGACGGCGACGGCATTTCCATCTTCGGTTCCTCCAATATTTGGATCGACCATGTTTCCATGTCCAGATGCCACGATGGTCTAATCGACGCCATTATGGGATCCACCGCCATCACCATCTCCAATTGCCACTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGACGGGTACTCGAGAGATTCAATAATGCAAATAACGGTGGCATTCAACCACTTTGGCCAGGGATTGATGCAGAGGATGCCGAGGTGCCGATGGGGCTTTGTCCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATCATCAGCCAGGGCAATCGCTTCATCGCTCCTCCAAATGTCTACGCCAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGAATGTATGGAAGAGCTGGACATGGAGATCGGAGGGAGATCTTATGATGAACGGAGCATTCTTCGTTACCTCAGGCGACCAGAGCAAGAGAAGACCCTTTTCAAAGTTGGATATGATCTCTTATAAGCCGGGGACATTCGTCACCAGGATGACCCGCTTCGCCGGTGCACTCCCTTGCTTCCTCGGCCGGCCATGC 1284 54.52 LLLTLSMAAVANSGIADFDDFWKKRAVEAQEAAAEAYEPNPEKITDSINEEVGELLAGSNRTGRNLNSKKYRGPCRATNPIDRCWRCNPNWAANRKKLADCVLGFGRRTIGGKMGPYYLVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFGSNMAIRLTQELIMTSDKTIDARGANVQIAFGAGITIQYVKNVIIHGLRIHHIVVGTGGMVRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSRDSIMQITVAFNHFGQGLMQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPENVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSKLDMISYKPGTFVTRMTRFAGALPCFLGRPC 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22307006 22308606 - MC09g1696 Mch9g2162 699044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Mch9g2162 428 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Mch9g2162 428 Pfam Pectate lyase, N terminus 15 66 IPR007524 GO:0030570(InterPro)
Mch9g2162 428 SMART amb_all 153 350 IPR002022 -
Mch9g2162 428 Pfam Pectate lyase 166 344 IPR002022 -
Mch9g2162 428 PANTHER PECTATE LYASE 18-RELATED 34 423 IPR045032 GO:0030570(InterPro)
Mch9g2162 428 SUPERFAMILY Pectin lyase-like 58 422 IPR011050 -
Mch9g2162 428 Gene3D - 78 421 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g1816 Mch-Chr9:19952755 Mch9g2162 Mch-Chr9:22307006 1.76E-144 dispersed
Mch8g1622 Mch-Chr8:13220294 Mch9g2162 Mch-Chr9:22307006 1.39E-224 transposed
Mch8g2008 Mch-Chr8:22357645 Mch9g2162 Mch-Chr9:22307006 5.91E-208 transposed
Mch3g1522 Mch-Chr3:17330495 Mch9g2162 Mch-Chr9:22307006 1.77E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2162 K01728 - csv:101206497 758.829