Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2254 ATGAACCATCTCTTTGATCTGCCTGAACAGATTTGTTATGTGCAGTGTGGAATCTGTACCACCATTTTGTTGGTCAGTGTGCCGTGTAGCAGCTTGTCGATGGCGGTGACAGTGACGTGCGGCCACTGCTCAAGCCTCCTCTCCGTTAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCATCTATTGCTCGCAATGTGCCCAAAGAATCAGGTGGAGAAATGAATTCTGGGAAGTTCTTGGACAGTTTCAAGGCATCAAACTTGAAATTTTCTGAGTATGAAGATGATGAAGGAGGATTGATCCCTGTGACACCTCCTGTTGTTAACAAACCTCCTGCAAAAAGACAGCGAGCCCCATCAGCATATAACTGTTTCATCAAGAATGAAATTAGAAGGCTCAAAGCTCAAAATCCTCAAATGTCTCACAAGGAGGCCTTCAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCTATCCAACAAAAAGAAGACGCAGAGAGCTGTAATCAGATCGAGGAAAATGGGGTTTGGGACACTCAAATGCCCGAGGTAAAA 564 44.86 MNHLFDLPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSIARNVPKESGGEMNSGKFLDSFKASNLKFSEYEDDEGGLIPVTPPVVNKPPAKRQRAPSAYNCFIKNEIRRLKAQNPQMSHKEAFRTAAKNWANFPPIQQKEDAESCNQIEENGVWDTQMPEVK 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22896056 22897237 - MC09g1775 Mch9g2254 699136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2254 188 FunFam Axial regulator YABBY 4 107 174 - -
Mch9g2254 188 Pfam YABBY protein 8 163 IPR006780 GO:0007275(InterPro)
Mch9g2254 188 SUPERFAMILY HMG-box 105 163 IPR036910 -
Mch9g2254 188 Gene3D High mobility group box domain 110 187 IPR036910 -
Mch9g2254 188 PANTHER PROTEIN YABBY 6-RELATED 8 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2254 K25796 - - csv:101211641 329.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0030 Mch-Chr8:181160 Mch9g2254 Mch-Chr9:22896056 5.45E-48 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch9g2254 Mch-Chr9:22896056 3.12E-28 dispersed
Mch9g2254 Mch-Chr9:22896056 Mch6g1777 Mch-Chr6:20335000 6.71E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44133 PF04690 YABBY 3.30E-57 CL0114 Mch TF