Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2254 ATGAACCATCTCTTTGATCTGCCTGAACAGATTTGTTATGTGCAGTGTGGAATCTGTACCACCATTTTGTTGGTCAGTGTGCCGTGTAGCAGCTTGTCGATGGCGGTGACAGTGACGTGCGGCCACTGCTCAAGCCTCCTCTCCGTTAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCATCTATTGCTCGCAATGTGCCCAAAGAATCAGGTGGAGAAATGAATTCTGGGAAGTTCTTGGACAGTTTCAAGGCATCAAACTTGAAATTTTCTGAGTATGAAGATGATGAAGGAGGATTGATCCCTGTGACACCTCCTGTTGTTAACAAACCTCCTGCAAAAAGACAGCGAGCCCCATCAGCATATAACTGTTTCATCAAGAATGAAATTAGAAGGCTCAAAGCTCAAAATCCTCAAATGTCTCACAAGGAGGCCTTCAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCTATCCAACAAAAAGAAGACGCAGAGAGCTGTAATCAGATCGAGGAAAATGGGGTTTGGGACACTCAAATGCCCGAGGTAAAA 564 44.86 MNHLFDLPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSIARNVPKESGGEMNSGKFLDSFKASNLKFSEYEDDEGGLIPVTPPVVNKPPAKRQRAPSAYNCFIKNEIRRLKAQNPQMSHKEAFRTAAKNWANFPPIQQKEDAESCNQIEENGVWDTQMPEVK 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22896056 22897237 - MC09g1775 Mch9g2254 699136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2254 188 FunFam Axial regulator YABBY 4 107 174 - -
Mch9g2254 188 Pfam YABBY protein 8 163 IPR006780 GO:0007275(InterPro)
Mch9g2254 188 SUPERFAMILY HMG-box 105 163 IPR036910 -
Mch9g2254 188 Gene3D High mobility group box domain 110 187 IPR036910 -
Mch9g2254 188 PANTHER PROTEIN YABBY 6-RELATED 8 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0030 Mch-Chr8:181160 Mch9g2254 Mch-Chr9:22896056 5.45E-48 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch9g2254 Mch-Chr9:22896056 3.12E-28 dispersed
Mch9g2254 Mch-Chr9:22896056 Mch6g1777 Mch-Chr6:20335000 6.71E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44133 PF04690 YABBY 3.30E-57 CL0114 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2254 K25796 - csv:101211641 329.717