Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2260 ATGGAAGAAATGTACGGACTGCAATCCACGGCGGAGTATTCGGACAAGGCGTTGATGTCGCCGGAGAATCTGATTCTGCCGCCGGATTACCAGACTTTACTGGCGTCGTCCGGGGACTTCCGCGATCGGATTCCAGTGTTTGGATCCAACGAATTGCTGTCGGCGGCAGCCTCAGCGATATCGGAAGCCGAAGCGGCATCGATCACGCCCGAAATTCAACGTGAAGACGATTTCATCAACGTGATCAAAGCCAAAATTTCTTCTCATCCTTCTTATCCTCGTTTGCTCCATGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACAGATGTTAGAGGAAATCCGTCAGGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGACGAATTCATGGATACGTACTGCGATATGTTGGTGAAGTATAAATCAGATCTCAAGAGGCCTTTTGATGAAGCGACGACGTTTTTAAATAAGATCGAAATGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGTGCTGTCTCATCGGATGAAGACTTAAGCGGAGGAGAGATGGAAGCTGTGGAGGCGGAGCCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAACTTTTACGTAGATTTGGCAGTCATATTAGTACCTTAAAATTGGAGTTCTCTAAGAAGAAGAAAAAGGGAAAATTGCCCAAAGAAGCCAGGCAAATACTCTTTGAATGGTGGAGTGTTCACTATAAATGGCCTTATCCTACGGAAGCCGATAAGGTGGCGCTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAACGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAACAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 975 47.79 MEEMYGLQSTAEYSDKALMSPENLILPPDYQTLLASSGDFRDRIPVFGSNELLSAAASAISEAEAASITPEIQREDDFINVIKAKISSHPSYPRLLHAYIDCQKVGAPPEIAQMLEEIRQESDLCNRHAVTTCLGVDPELDEFMDTYCDMLVKYKSDLKRPFDEATTFLNKIEMQLSNLCNGAFSRSLSDEGAVSSDEDLSGGEMEAVEAEPQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQILFEWWSVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFETMDGLSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22932845 22941578 + MC09g1781 Mch9g2260 699142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2260 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Mch9g2260 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch9g2260 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Mch9g2260 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch9g2260 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch9g2260 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Mch9g2260 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch9g2260 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Mch9g2260 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Mch9g2260 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Mch9g2260 324 Gene3D - 239 316 - -
Mch9g2260 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch9g2260 324 MobiDBLite consensus disorder prediction 192 221 - -
Mch9g2260 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch9g2260 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch9g2260 324 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1729 Mch-Chr1:17858038 Mch9g2260 Mch-Chr9:22932845 6.32E-77 dispersed
Mch4g0267 Mch-Chr4:1731981 Mch9g2260 Mch-Chr9:22932845 3.00E-75 dispersed
Mch8g0482 Mch-Chr8:3376186 Mch9g2260 Mch-Chr9:22932845 5.52E-30 dispersed
Mch8g0595 Mch-Chr8:4244733 Mch9g2260 Mch-Chr9:22932845 2.17E-46 dispersed
Mch8g2772 Mch-Chr8:30795674 Mch9g2260 Mch-Chr9:22932845 2.63E-80 transposed
Mch6g0144 Mch-Chr6:909398 Mch9g2260 Mch-Chr9:22932845 1.61E-114 wgd
Mch8g0036 Mch-Chr8:217516 Mch9g2260 Mch-Chr9:22932845 8.59E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44134 PF03791 KNOX2 1.60E-24 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2260 - - - 0.0