Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2354 ATGGATGCTCCCGAGGTCGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGGAATTTATTGCCAAGTTATGTCAATTTTCCCTTTGTTAGAAGCAGCACGACCCAGAAGCAAAACTGGGATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATATTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGTCCATAACTGGAGATGCTGTTCTCGCCAAATTTGAAAGGGCAAGATGTTCTCTTGAAGTTAGTCTTGTATGCGTTGAAGATATTGTTTCACAATCAATTGGAGATCAGATTCAGCAGATAGTGAATGAACTCAAGGACACTGTTTTCTTACTTGATCCACTCGAGAAGCAAGTTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCTAATGGCCATAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCATAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAAGAATCAATTGTGGCTTACCTTTTGCATCTTATGAGGAAGTATTCTAAATTATTTAGAACTGAGTTGTCTGATGACACCGACTCGCAGGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTTTCTCGAGGACAATGGACTTCCAGCCAACGGTCAAGTCTTTGAACAGCAGCTTTCAAAGCTTAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAGTTGAGGTGTCCAATATCATTGCAGCTTATGTATGACCCTGTCATAATCGATTCTGGGCAAACATATGAAAGGATCTGCATTGAGAGGTGGTTCAGTGATGGTCATAAAATTTGCCCAAAGACTCAACTAAAGCTCTCCCATCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAATGGAGTTCCTATCCCTGATGGTCCACCAAAGTCACTTGATCTAAACTATTGGAGGCTTGCATTGTCTGATTCCGAGTCTGGAAAGTCAAGATCCATGGACAATGTTGGCTCTTGTATGTTGAAGGAAGTTAAGGTTGTTCCTTTTGAGGTAAGTGGAACCATTACTATTGCTGAAGAAAATGAAGTAGATAATAATTCGTACTTGGAGGAGTCATGTGATCTTATTACACTGGAGAGTTGTGTAAACTTAATGACATTATTGACGGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTCTACTGAAGGATGATGATGAGGCTCGAATTTTGATGGGATCCAATGGCTTTGCTGAGGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAACCTTTCTGTCAACAATAACAGAAACAGGGAGACAATGATAGCAGCAGGTGTTATCTCATTGTTGGAGAACATGATTTTGAAGTCCAATTTACATGGACCTGCAACAGCCCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGCTCGAGTAGAGCCGTTCCTTGCCTGATCCAGCTACTTACTAGTAATGCCGAATCCCAAACGAAGCTCGATGCGCTTCATGCCCTTTATAACCTTTCAACCGTGCCCTCCATAGTTCCTGTTCTTCTTTCCGCTGGCATCATCGGTGGACTTCAATCCTTTCTTGCAGCCCCTGGTGACAACATGTGGACAGAGACTTCCTTAGCTGTCTTGATAAACTTAGCATCAATCCAGTTGGGGATAGACGAAATAATATCGGCCCCAGAGCTTATCAGCGGGTTGGCAGCAATTGTGGATGCAGGCGAACGCTCTGAGCAAGAGCAAGCCGTGTCATGTTTGTTGATTTTATGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGGGTGATTCCTGGATTGGTGGCAATTACCGTAAATGGGACTTCAAGAGGGAAAGTAAAAGCTCAGAAACTTCTGATGCTGTTCAGGGAGCAGAGGCAAAAAGACAGCGATATCGTCCAGCAGCGAGATGGAAACAGCGAGTCGTTCATGGCTGCGCCAGAATCAAAGCCACTATGCAAATCAGTGTCGAAGAAGAAGATGGGGAAAGCATTAAGCTTTTTTGCGAAGAGCAAAAGATTTTCACTATACCAATGTTAA 2301 42.68 MDAPEVEEIFFAAGDAKLHGEMYKKLAGIYCQVMSIFPLLEAARPRSKTGIQALCSLHVALEKAKNILQHCSESSKLYLSITGDAVLAKFERARCSLEVSLVCVEDIVSQSIGDQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLIERARLEEDKRKESIVAYLLHLMRKYSKLFRTELSDDTDSQGSTPCSPTVRCFLEDNGLPANGQVFEQQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIERWFSDGHKICPKTQLKLSHLSLTPNYSVKGLIANWCEHNGVPIPDGPPKSLDLNYWRLALSDSESGKSRSMDNVGSCMLKEVKVVPFEVSGTITIAEENEVDNNSYLEESCDLITLESCVNLMTLLTEEGDLRKKCKVVEQIRLLLKDDDEARILMGSNGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNRETMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSRAVPCLIQLLTSNAESQTKLDALHALYNLSTVPSIVPVLLSAGIIGGLQSFLAAPGDNMWTETSLAVLINLASIQLGIDEIISAPELISGLAAIVDAGERSEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDSDIVQQRDGNSESFMAAPESKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23503244 23508695 - MC09g1858 Mch9g2354 699236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2354 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g2354 766 Coils Coil 175 195 - -
Mch9g2354 766 Gene3D - 545 710 IPR011989 -
Mch9g2354 766 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
Mch9g2354 766 SUPERFAMILY RING/U-box 273 355 - -
Mch9g2354 766 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g2354 766 SMART arm_5 505 543 IPR000225 GO:0005515(InterPro)
Mch9g2354 766 SMART arm_5 459 503 IPR000225 GO:0005515(InterPro)
Mch9g2354 766 SMART arm_5 544 585 IPR000225 GO:0005515(InterPro)
Mch9g2354 766 Gene3D - 417 535 IPR011989 -
Mch9g2354 766 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Mch9g2354 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Mch9g2354 766 CDD RING-Ubox_PUB 280 332 IPR045210 -
Mch9g2354 766 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch9g2354 766 SUPERFAMILY ARM repeat 432 695 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0789 Mch-Chr10:5496246 Mch9g2354 Mch-Chr9:23503244 2.23E-56 dispersed
Mch3g1473 Mch-Chr3:16955375 Mch9g2354 Mch-Chr9:23503244 2.83E-09 dispersed
Mch9g1301 Mch-Chr9:15216303 Mch9g2354 Mch-Chr9:23503244 2.41E-20 dispersed
Mch9g2354 Mch-Chr9:23503244 Mch9g2041 Mch-Chr9:21607941 1.54E-06 dispersed
Mch8g0100 Mch-Chr8:579458 Mch9g2354 Mch-Chr9:23503244 5.48E-268 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2354 - - - 0.0