Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2356 CTCCATGGCTACATTCCTTCAGAGCTCGGCTCGCTTGTTTATCTCCGTCGATTGAACCTCCATAACAATAACTTCTACGGCTCGATACCTGAGCAGTTGTTTAATGCTACCTCATTGCACAGCCTCTTTCTCTATAGTAATAACCTATCCGGTCCTTTCCCCCCCTCGATCTGCAACATTCCGAGGCTCCAAAACCTCGATCTCTCCAACAATTCTCTCGCCGGACCAATCCCCGATGATTTGAAGAACTGTAAGCAATTACAGCGTTTAATACTCGCCAGAAATCAATTCGAGGGAGAAATTCCGTCTGGTGTGTGGTCCGAGATGGATAACTTACTTCAACTCGATCTATCGTCCAACGATTTCAGCGGATCGATTCCGGAGGATTTGGGGGAACTGAAGACACTTTCCGGTACACTCAATCTATCCTTCAATCATTTATCCGGAAAAATTCCGAAATCGCTCGGAGATTTGCCGGTGACGGTGAGTTTTGACCTTCGGCACAACAATTTGAGCGGAAGCATACCTCAGACGGGTTCTTTCGCGAATCAAGGACCAACCGCATTTCTCAATAATCCCATGCTGTGCGGATTTCCTCTCCAGAAATCTTGTCAGAATTCAGAACGTGGCTCCCCGGAAAATCCGGATTCAAGGCCATCGTACATTGCCCCTAGAAAAGGCTTGAGCGCCGGATTAATCATTCTCATCTCGGCCGCCGACGCCGCCGGAGTGGCGTTTATCGGCCTAGTAATAGTTTTTCCTTGCATCAATGGACATGATAAGAACGACGAGTCCGAAATGGAGGAACCGGAGAACAGTGACAGAAGCAGAGGGGAAGGAGGGCTTGTGGCCGTAGACAAAGGGTTTACGTTCGAGCTCGACGAGCTGCTGAGGGCATCGGCCTATGTTCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTGCTCGGAAATGGGATCCCGGTGGCCGTGAGGCGGCTGGGCGAAGGCGGAGAACAGAGGTACAGGGAGTTCGCGGCGGAGGTGCAGGCCATAGGGAGGGTAAAGCATCCAAATATTGTCAAACTGAGAGCTTATTATTGGGCGCCGGACGAGAAGCTTCTGATCAGTGATTTCATCTCCAATGGGAACTTGGCCTCTGCACTTCGCGGGAGAAATGGGCAGCCATCTACAAGCCTTTCGTGGTCAACAAGACTGCGAATTGCCAAGGGAACCGCAAGGGGGTTGGCGTATCTACACGAGTGCAGTCCAAGAAAGTTCGTCCACGGCGACATCAAACCCTCCAACATTCTCCTCGACAACGAATTCCAGCCCCACATCTCTGACTTCGGCCTCAACCGCCTCATCAGCATCACCGGCAACAACCCCTCCTCCTCCGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAGTCAGTCCAAACCGACCGCACCAACAACTACTGCGCACCGGAGGCCAGAGCCCCCGGCGGCCGCCCCACCCAGAAATGGGACGTTTACTCCTTCGGAGTCATGGTTCTCGAATTACTCACCGGCAAGTCGCCGGAGCTTTCTCCGAACACGTCGACTTCATTGGAGATTCCAGATTTGGTGAGATGGGTCAGAAAAGGATTTGAAGAAGCAAAGCCATTGTCGGATTTGGTCGACCCGGCCCTGTTACAAGAAGTACATGCCAAGAAGGAGGTGCTCGCCGTATTCCACGTGGCGCTCGCCTGTACAGAGAGCGACCCGGAAGTTCGGCCGAGAATGAAAACGGTGTCGGAGAGTTTCGACAGGATTGGATCGTGA 1791 52.54 LHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPIPDDLKNCKQLQRLILARNQFEGEIPSGVWSEMDNLLQLDLSSNDFSGSIPEDLGELKTLSGTLNLSFNHLSGKIPKSLGDLPVTVSFDLRHNNLSGSIPQTGSFANQGPTAFLNNPMLCGFPLQKSCQNSERGSPENPDSRPSYIAPRKGLSAGLIILISAADAAGVAFIGLVIVFPCINGHDKNDESEMEEPENSDRSRGEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYREFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQPSTSLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIGS 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23523897 23527257 + MC09g1859 Mch9g2356 699238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2356 596 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
Mch9g2356 596 Pfam Leucine Rich Repeat 139 158 IPR001611 GO:0005515(InterPro)
Mch9g2356 596 ProSiteProfiles Protein kinase domain profile. 298 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2356 596 MobiDBLite consensus disorder prediction 201 221 - -
Mch9g2356 596 FunFam Leucine-rich repeat receptor-like protein kinase 281 373 - -
Mch9g2356 596 Gene3D Phosphorylase Kinase; domain 1 289 373 - -
Mch9g2356 596 Pfam Leucine rich repeat 15 73 IPR001611 GO:0005515(InterPro)
Mch9g2356 596 FunFam Leucine-rich repeat receptor-like protein kinase 111 206 - -
Mch9g2356 596 SUPERFAMILY Protein kinase-like (PK-like) 303 588 IPR011009 -
Mch9g2356 596 Gene3D Transferase(Phosphotransferase) domain 1 374 596 - -
Mch9g2356 596 FunFam Os07g0541700 protein 382 461 - -
Mch9g2356 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g2356 596 Pfam Protein kinase domain 303 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2356 596 FunFam Leucine-rich repeat receptor protein kinase EMS1 5 104 - -
Mch9g2356 596 Gene3D Ribonuclease Inhibitor 1 208 IPR032675 -
Mch9g2356 596 CDD STKc_IRAK 304 594 - -
Mch9g2356 596 SMART serkin_6 302 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g2356 596 SUPERFAMILY L domain-like 3 201 - -
Mch9g2356 596 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 108 594 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0359 Mch-Chr1:7461927 Mch9g2356 Mch-Chr9:23523897 1.01E-102 dispersed
Mch4g2621 Mch-Chr4:26410952 Mch9g2356 Mch-Chr9:23523897 7.64E-94 dispersed
Mch9g1932 Mch-Chr9:20819970 Mch9g2356 Mch-Chr9:23523897 1.64E-116 dispersed
Mch9g1940 Mch-Chr9:20871966 Mch9g2356 Mch-Chr9:23523897 4.75E-68 dispersed
Mch9g2356 Mch-Chr9:23523897 Mch7g0889 Mch-Chr7:13444948 6.17E-54 dispersed
Mch9g2356 Mch-Chr9:23523897 Mch4g1364 Mch-Chr4:17006297 2.97E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77726 PF00069 Pkinase 1.80E-32 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2356 - - - 0.0