Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2378 ATGGGAACTCTCATACGGGATTTGGTAGAAGACGAGGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCGGATGATATCACATTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTTGCATTTGTGGAAGCTGTGAGCGGAAAGGCGTATACTTACCGTGAAGTCGTGAGAGACACGAAGAGATTCGCTAAGGCCTTGAGCTCTCTGAGGTTGAGGAAGGGTCAGGTGGTTATTGTTGTTCTTCCTAACGTTGCAGAATATGCCATTGTGGCTCTAGGGATAATGGCTGCTGGGGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAGCAGGTGGAGGCAGCCGATGCCAAGCTCGTTGTCACAAATAGCCCAAACTTCGAAAAGGTGAAGGAATTAAAGCTACCAGTGATAGTATTGGGTGAAGAACTGATTGAAGGTTCCATGAACTGGCACAAACTGCTCGAAGCCGCGGACCGTGCAGGCAACAATCATGTCAAGGAAGATATCAAGCAGTCTGATTTGTGTGCTCTTCCTTTCTCGTCAGGCACCACAGGGGTTTCCAAAGGTGTCATGCTAACTCACCGAAATCTAGTGGCTAACTTGTGTTCTACTCTCTCCGGCGTGCCCCGAGAAACGGAGGGCAAGGTCACGACGTTAGGCCTCATTCCGTTCTTCCATATTTATGGGATAACTGGCATATGTTGTGCCACACTTAGAAACAAAGGCAAAGTTGTGGTGATGGGAAGATTTGATCTTAGGACCTTCATTAATGCCCTGATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCCATCATCTTGGCTTTGGTTAAGAATCCCATTGTGGAGGAATTTGATCTTAGCAGTCTCAAACTTCAGGCAATCATGACTGCAGCCGCCCCGCTCGCACCGGAAATTCAGACTGCCTTTGAGAAAAAGTTCCCGGGCGTGGATGTTCAAGAGGCATATGGACTAACTGAGCACAGCTGCATCACTCTCAACTATGGAAGCATAGGCAAGGAGAATCTCACTGCAAAGAAAAACACAGTTGGCCGAATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCCGAGAGCGGAAGATCTCTGCCAAAGAATACTCCGGGAGAAATATGTGTAAGAAGTCAGTGTGTGATGCAAGGCTACTACAATAATGAAGAGGAGACTTCAAGGACCATTGACAACAGAGGATGGCTGCACACTGGGGACATTGGATACATCGATGACAATGGCGATGTGTTTATTGTGGATCGTATTAAAGAGTTGATTAAGTATAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAAGCAATCCTCCTTACTCATCCCTCCATTGAAGATGCAGCAGTGGTGCCGTTGCCAGATGAAGAAGCCGGTGAAATCCCAGCAGCGAGCGTCGTGATAGCTCCAAATTCGAAAGAAACTGAAGAAGAGATAATCCAATACGTTGCCTCAAACGTTGCATATTACAAGAAAGTCAGGGTGGTTCATTTTGTGGACTCTATCCCAAAATCGCCTTCTGGGAAAGTTATGAGAAGGCTGATCAAAGAGAAGATGATCGATAAGATTCGAGCCAAGACCGCCTCT 1650 46.36 MGTLIRDLVEDEEHIFRSQLPEVQVPDDITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDTKRFAKALSSLRLRKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEAADAKLVVTNSPNFEKVKELKLPVIVLGEELIEGSMNWHKLLEAADRAGNNHVKEDIKQSDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPRETEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSSLKLQAIMTAAAPLAPEIQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENLTAKKNTVGRILPNLEVKFIDPESGRSLPKNTPGEICVRSQCVMQGYYNNEEETSRTIDNRGWLHTGDIGYIDDNGDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVIAPNSKETEEEIIQYVASNVAYYKKVRVVHFVDSIPKSPSGKVMRRLIKEKMIDKIRAKTAS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23652413 23654667 - MC09g1879 Mch9g2378 699260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2378 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Mch9g2378 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Mch9g2378 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Mch9g2378 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Mch9g2378 550 CDD 4CL 25 534 - -
Mch9g2378 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Mch9g2378 550 Gene3D - 442 544 IPR045851 -
Mch9g2378 550 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Mch9g2378 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Mch9g2378 550 Gene3D - 13 441 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2676 Mch-Chr6:28467682 Mch9g2378 Mch-Chr9:23652413 1.54E-52 dispersed
Mch9g1823 Mch-Chr9:20021828 Mch9g2378 Mch-Chr9:23652413 4.50E-104 dispersed
Mch9g2378 Mch-Chr9:23652413 Mch8g1049 Mch-Chr8:7367318 7.26E-137 transposed
Mch9g2378 Mch-Chr9:23652413 Mch9g0492 Mch-Chr9:3635471 6.20E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2378 K01904 - csv:101220731 981.859