Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2397 ATGGAACTTACAGATATGCAAACCAACAACAAGCAGCAGCAGCAGCACAACAATAACAGCGCCACCCCACATCTCCACCACCACCACCGCCATCAGCAACACCAAAAGCACCCCTCTTCTCAATCTCAATCTCAATCCCAATCCCAATCCCAATCTCCCCAGCACCAGCACCAGCAGCAGCTTCATGTCGTCCCTTTCGATGGCAGTGGCAGATCATCAGGACCCTTCATGGGGGGCTCCATCTCCTCCACTACTCTTGTCTCCCTCCCCCCTCCTTCTTCTTCCTCAGCCACCGCCTCCGCCTCCGCCGCCCCCCCTCCTCACCTCCTCGACGCCTCCCTCGTCATCGCCACCAGATCCGACTCCAACAGCGACCCTTCTCCCCGATCCACCACCCCTACCCCTTCCAATTCCAACGCCCTCAAGCGCTCCACAAAGGACCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACCAGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTACTCCAGCAAGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGTACAATCCCTGCCAATTTCTCCTCCCTCAATATCTCCATTCGTAGCAGCGGATCCACGCTATCCGCGCCTCCCTCCAAGTCCGCTCCCCATTCTTTCCACGGCGCTTTGGCCCTAGCTCATCATCCCCACTACGAGGAAGGCTTTGCTCATGCTGCTTTGCTAGGGTTTCACCACCACCACCATCAACAGCAGCATCAACTGAATCTTATGACGGCCGATCAAATTGCAGAAGCACTCCCCAGCACTGGCGGCGGTGGAGGAGACTCGACCGATAACTATATGAGAAAACGCTTCAGAGAGGATCTATTTAAAGAGGATACGCAATCTCAAGGGCAAGGGGAGAGCGGATCTCCTAAAGCAATTAAGAGCGATCTACAATTACAGAAACAACAACAACAACAACAACAGTCGCAGCAGCAGTCTTCGTCGGGGCTACTCCGGGCTTCGAATATACTGCCGGCGACGGCCATGTGGGCGGTGGGTCCGGCCCCGAGCAGTGGGGCGAGCAACACGTTTTGGATGCTACCGGTGACGGCGGGTTCAGGTGGGGGGAATGTGGGGAGCGGGAGCAGTTCTGGGGCGGAAGCGCAGATATGGCCGTTCCCGACGGGTGGTGGAAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGACTCAACATCCCAAGCGGGGTGGAATTGGGAGGGGGAAGAGCGAGCCAACAGTTGCAACTGATGCAGCAGCAACCGAGTCAGCATCTGGGGCTGGGAGTATCGGAGTCCAATTTGGGAGTGTTGGCTGCTCTTAATGCGTATTCCAGGGGTGGTTTGAGTATGAATTCGGATCATCCATTGGAGCATCAGCCTCAGCCTCAGCCTCAGACTACTGATAGTGGGGACGAAGCCCCCAACAGTTCCCAA 1509 57.52 MELTDMQTNNKQQQQHNNNSATPHLHHHHRHQQHQKHPSSQSQSQSQSQSQSPQHQHQQQLHVVPFDGSGRSSGPFMGGSISSTTLVSLPPPSSSSATASASAAPPPHLLDASLVIATRSDSNSDPSPRSTTPTPSNSNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHYEEGFAHAALLGFHHHHHQQQHQLNLMTADQIAEALPSTGGGGGDSTDNYMRKRFREDLFKEDTQSQGQGESGSPKAIKSDLQLQKQQQQQQQSQQQSSSGLLRASNILPATAMWAVGPAPSSGASNTFWMLPVTAGSGGGNVGSGSSSGAEAQIWPFPTGGGNTLQAPLHLMPRLNIPSGVELGGGRASQQLQLMQQQPSQHLGLGVSESNLGVLAALNAYSRGGLSMNSDHPLEHQPQPQPQTTDSGDEAPNSSQ 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23740892 23742400 + MC09g1898 Mch9g2397 699279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2397 503 MobiDBLite consensus disorder prediction 1 21 - -
Mch9g2397 503 Pfam TCP family transcription factor 144 343 IPR017887 -
Mch9g2397 503 ProSiteProfiles TCP domain profile. 145 199 IPR017887 -
Mch9g2397 503 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 112 469 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch9g2397 503 MobiDBLite consensus disorder prediction 479 503 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 22 36 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 75 102 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 307 347 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 119 141 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 1 106 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 311 347 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 142 158 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 119 160 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 37 66 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 471 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1754 Mch-Chr3:18879542 Mch9g2397 Mch-Chr9:23740892 1.71E-40 dispersed
Mch6g0228 Mch-Chr6:1519570 Mch9g2397 Mch-Chr9:23740892 9.92E-42 dispersed
Mch9g2143 Mch-Chr9:22181244 Mch9g2397 Mch-Chr9:23740892 1.65E-42 dispersed
Mch8g1386 Mch-Chr8:10294117 Mch9g2397 Mch-Chr9:23740892 9.86E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44138 PF03634 TCP 2.10E-38 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2397 - - - 0.0