Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2397 ATGGAACTTACAGATATGCAAACCAACAACAAGCAGCAGCAGCAGCACAACAATAACAGCGCCACCCCACATCTCCACCACCACCACCGCCATCAGCAACACCAAAAGCACCCCTCTTCTCAATCTCAATCTCAATCCCAATCCCAATCCCAATCTCCCCAGCACCAGCACCAGCAGCAGCTTCATGTCGTCCCTTTCGATGGCAGTGGCAGATCATCAGGACCCTTCATGGGGGGCTCCATCTCCTCCACTACTCTTGTCTCCCTCCCCCCTCCTTCTTCTTCCTCAGCCACCGCCTCCGCCTCCGCCGCCCCCCCTCCTCACCTCCTCGACGCCTCCCTCGTCATCGCCACCAGATCCGACTCCAACAGCGACCCTTCTCCCCGATCCACCACCCCTACCCCTTCCAATTCCAACGCCCTCAAGCGCTCCACAAAGGACCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACCAGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTACTCCAGCAAGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGTACAATCCCTGCCAATTTCTCCTCCCTCAATATCTCCATTCGTAGCAGCGGATCCACGCTATCCGCGCCTCCCTCCAAGTCCGCTCCCCATTCTTTCCACGGCGCTTTGGCCCTAGCTCATCATCCCCACTACGAGGAAGGCTTTGCTCATGCTGCTTTGCTAGGGTTTCACCACCACCACCATCAACAGCAGCATCAACTGAATCTTATGACGGCCGATCAAATTGCAGAAGCACTCCCCAGCACTGGCGGCGGTGGAGGAGACTCGACCGATAACTATATGAGAAAACGCTTCAGAGAGGATCTATTTAAAGAGGATACGCAATCTCAAGGGCAAGGGGAGAGCGGATCTCCTAAAGCAATTAAGAGCGATCTACAATTACAGAAACAACAACAACAACAACAACAGTCGCAGCAGCAGTCTTCGTCGGGGCTACTCCGGGCTTCGAATATACTGCCGGCGACGGCCATGTGGGCGGTGGGTCCGGCCCCGAGCAGTGGGGCGAGCAACACGTTTTGGATGCTACCGGTGACGGCGGGTTCAGGTGGGGGGAATGTGGGGAGCGGGAGCAGTTCTGGGGCGGAAGCGCAGATATGGCCGTTCCCGACGGGTGGTGGAAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGACTCAACATCCCAAGCGGGGTGGAATTGGGAGGGGGAAGAGCGAGCCAACAGTTGCAACTGATGCAGCAGCAACCGAGTCAGCATCTGGGGCTGGGAGTATCGGAGTCCAATTTGGGAGTGTTGGCTGCTCTTAATGCGTATTCCAGGGGTGGTTTGAGTATGAATTCGGATCATCCATTGGAGCATCAGCCTCAGCCTCAGCCTCAGACTACTGATAGTGGGGACGAAGCCCCCAACAGTTCCCAA 1509 57.52 MELTDMQTNNKQQQQHNNNSATPHLHHHHRHQQHQKHPSSQSQSQSQSQSQSPQHQHQQQLHVVPFDGSGRSSGPFMGGSISSTTLVSLPPPSSSSATASASAAPPPHLLDASLVIATRSDSNSDPSPRSTTPTPSNSNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHYEEGFAHAALLGFHHHHHQQQHQLNLMTADQIAEALPSTGGGGGDSTDNYMRKRFREDLFKEDTQSQGQGESGSPKAIKSDLQLQKQQQQQQQSQQQSSSGLLRASNILPATAMWAVGPAPSSGASNTFWMLPVTAGSGGGNVGSGSSSGAEAQIWPFPTGGGNTLQAPLHLMPRLNIPSGVELGGGRASQQLQLMQQQPSQHLGLGVSESNLGVLAALNAYSRGGLSMNSDHPLEHQPQPQPQTTDSGDEAPNSSQ 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23740892 23742400 + MC09g1898 Mch9g2397 699279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2397 503 MobiDBLite consensus disorder prediction 1 21 - -
Mch9g2397 503 Pfam TCP family transcription factor 144 343 IPR017887 -
Mch9g2397 503 ProSiteProfiles TCP domain profile. 145 199 IPR017887 -
Mch9g2397 503 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 112 469 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch9g2397 503 MobiDBLite consensus disorder prediction 479 503 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 22 36 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 75 102 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 307 347 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 119 141 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 1 106 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 311 347 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 142 158 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 119 160 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 37 66 - -
Mch9g2397 503 MobiDBLite consensus disorder prediction 471 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2397 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1754 Mch-Chr3:18879542 Mch9g2397 Mch-Chr9:23740892 1.71E-40 dispersed
Mch6g0228 Mch-Chr6:1519570 Mch9g2397 Mch-Chr9:23740892 9.92E-42 dispersed
Mch9g2143 Mch-Chr9:22181244 Mch9g2397 Mch-Chr9:23740892 1.65E-42 dispersed
Mch8g1386 Mch-Chr8:10294117 Mch9g2397 Mch-Chr9:23740892 9.86E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44138 PF03634 TCP 2.10E-38 No_clan Mch TF