Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0017 ATGGCTGTTGTCGATGGATCTCTATTGCCATTGAAGCTCTACTCCTTTTGGGCTAGTTCTTGTGCTCATCGCGTTCGAATTGCCCTAAACTTGAAAGGGCTTAGCTATGAGTACAAAGCCATTGATGTCATGAAAGGAGAGCATTTGAGTCCTGATTATCTAAAGCTGAATCCTGTTGGTTTTGTACCTACTCTTGTGGATGGGGATATTGTTATTGCTGACTCTTTTGCTATAATAATGTATTTGGAGGAAAAATATCCTCAGCATCCTTTGTTGCCTAGCGATCTACATAAAAGGGCTATTAATATCCAGGCTGCAAATATTGTTTCTTCAAGCATACAGCCTCTTCAAAATCTAATTGTTGAGAATTACATTGAGGAAAAATGTGGTCCAGAGGAGAAACTTTCTTGGGTTCATATGATAATTGGGAAAGGTTTTTTAGCACTTGAGAAGTTGCTAAAGGTTCATTCTGGAAAATTTGCTACTGGTGATGAAATTTATTTGGCAGACTTGTTTTTGGCACCTCAAATTCAACGCGCCGTTGAAACATTCAATATCGACATGTCCAAGTTTCCAATTTTATCGAGATTGTATGAGGAATACAACGAGGTATCAGCATTTCAAGATGCGGCACCAGAGAAGCAGCCAGATGCCCCTTCCAAGAGCTATACTTGA 675 39.56 MAVVDGSLLPLKLYSFWASSCAHRVRIALNLKGLSYEYKAIDVMKGEHLSPDYLKLNPVGFVPTLVDGDIVIADSFAIIMYLEEKYPQHPLLPSDLHKRAINIQAANIVSSSIQPLQNLIVENYIEEKCGPEEKLSWVHMIIGKGFLALEKLLKVHSGKFATGDEIYLADLFLAPQIQRAVETFNIDMSKFPILSRLYEEYNEVSAFQDAAPEKQPDAPSKSYT 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 307605 310239 + Sed0002014.1 Sed01g0017 699321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0017 224 PANTHER MALEYLACETOACETATE ISOMERASE 11 218 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Sed01g0017 224 FunFam Glutathione S-transferase Z1 10 93 - -
Sed01g0017 224 SFLD Main (cytGST) 11 201 - -
Sed01g0017 224 Gene3D Glutaredoxin 10 93 - -
Sed01g0017 224 SUPERFAMILY Thioredoxin-like 7 93 IPR036249 -
Sed01g0017 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 95 220 IPR010987 -
Sed01g0017 224 NCBIfam maleylacetoacetate isomerase 12 218 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Sed01g0017 224 SUPERFAMILY GST C-terminal domain-like 90 219 IPR036282 -
Sed01g0017 224 FunFam Maleylacetoacetate isomerase 94 221 - -
Sed01g0017 224 Pfam Glutathione S-transferase, N-terminal domain 13 89 IPR004045 -
Sed01g0017 224 Gene3D - 94 221 - -
Sed01g0017 224 CDD GST_N_Zeta 11 83 IPR034333 -
Sed01g0017 224 CDD GST_C_Zeta 96 215 IPR034330 -
Sed01g0017 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 9 90 IPR004045 -
Sed01g0017 224 SFLD Glutathione Transferase (cytosolic) 11 201 IPR040079 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0017 Sed-Chr1:307605 Sed12g0244 Sed-Chr12:1418675 7.60E-69 dispersed
Sed01g0017 Sed-Chr1:307605 Sed01g0019 Sed-Chr1:321890 4.00E-86 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0017 K01800 - csv:116401624 371.318