Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0019 ATGTGGCATCCTTGTGAATTGAGAATGAGCGGAGGTGATTTGGGCGATCAAAGCAGCATGAGTGAAAATGTTGCGGCGTTGCCTCCGTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTCAGCGTGTTCGAATTGCCCTAAACTTGAAAGGGCTGAATTTCGAGTACAAAGCTGTTGACCTACTCAACGGACACCAATTCACTCCCGAGTACGAAAAGATCAACCCTATCGGTTATGTACCCACTCTCGTGGATGGGGATGTTGTCATTGCCGACTCTTTTGCTATTCTAATGTATTTGGAGGAGAAGTATCCTCACCCTCATCCTCTACTGCCTCCTGATCTTACTAAAAGAGCTCTCAACTATCAGGCTGCAAACATTGTTTCTTCCAGCATACAGCCTCTTCAAAATCTAGCTGTTCTGAAGTACATTGAGCAACAATCTGGCCCACACCAAAAACTTCATTGGGTTCAACGTGCCATCCAAAAAGGTTTTGCAGCACTTGAAAAACTGCTAAAAGATCATGCGGGTAAATTTGCTACAGGGGACGAAATCTTTCTGGCAGACTTGTTTTTGGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGCGTTGACATGTCCAAATTTCCACTTTTAAGCAGGTTGAACGAGGAATACAATGCTATTCCAGCATTTCAAAATGCAGAGCCAGCAAAACAGCCTGATGCTCCTCAAAGCTCTAGCTAA 732 44.4 MWHPCELRMSGGDLGDQSSMSENVAALPPLKLYSYWRSSCSQRVRIALNLKGLNFEYKAVDLLNGHQFTPEYEKINPIGYVPTLVDGDVVIADSFAILMYLEEKYPHPHPLLPPDLTKRALNYQAANIVSSSIQPLQNLAVLKYIEQQSGPHQKLHWVQRAIQKGFAALEKLLKDHAGKFATGDEIFLADLFLAPQIHGAINRFSVDMSKFPLLSRLNEEYNAIPAFQNAEPAKQPDAPQSSS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 321890 328330 + Sed0028209.1 Sed01g0019 699323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0019 243 Pfam Glutathione S-transferase, C-terminal domain 141 226 IPR004046 -
Sed01g0019 243 Gene3D Glutaredoxin 29 112 - -
Sed01g0019 243 FunFam Maleylacetoacetate isomerase 114 241 - -
Sed01g0019 243 PANTHER MALEYLACETOACETATE ISOMERASE 30 238 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Sed01g0019 243 CDD GST_C_Zeta 118 235 IPR034330 -
Sed01g0019 243 SUPERFAMILY GST C-terminal domain-like 110 239 IPR036282 -
Sed01g0019 243 FunFam Glutathione S-transferase Z1 29 113 - -
Sed01g0019 243 CDD GST_N_Zeta 30 102 IPR034333 -
Sed01g0019 243 Gene3D - 113 241 - -
Sed01g0019 243 SFLD Main (cytGST) 30 216 - -
Sed01g0019 243 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 115 240 IPR010987 -
Sed01g0019 243 Pfam Glutathione S-transferase, N-terminal domain 32 108 IPR004045 -
Sed01g0019 243 NCBIfam maleylacetoacetate isomerase 31 238 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Sed01g0019 243 SFLD Glutathione Transferase (cytosolic) 30 216 IPR040079 -
Sed01g0019 243 SUPERFAMILY Thioredoxin-like 28 113 IPR036249 -
Sed01g0019 243 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 28 109 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0019 K01800 - - csv:101213302 333.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0019 Sed-Chr1:321890 Sed12g0244 Sed-Chr12:1418675 3.10E-68 dispersed
Sed01g0017 Sed-Chr1:307605 Sed01g0019 Sed-Chr1:321890 4.00E-86 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0333 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 5.9e-63 238.4
Sed09g1225 . 24 227 Glutathione S-transferase Gene Family AT4G02520 56.0 2.0e-58 223.4
Sed07g0332 . 5 210 Glutathione S-transferase Gene Family AT4G02520 55.5 2.8e-57 219.5
Sed09g1224 . 5 210 Glutathione S-transferase Gene Family AT4G02520 54.1 5.4e-56 215.3
Sed09g1223 . 5 210 Glutathione S-transferase Gene Family AT4G02520 53.1 5.9e-55 211.8
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 6.6e-62 235.0
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT2G02930 56.7 3.6e-60 229.2
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT2G02930 56.2 3.4e-58 222.6
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT2G02930 53.8 2.0e-55 213.4
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT2G02930 53.3 1.0e-54 211.1
Sed07g0333 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 8.2e-59 224.9
Sed09g1224 . 6 207 Glutathione S-transferase Gene Family AT1G02950 51.2 2.7e-54 209.9
Sed09g1223 . 6 207 Glutathione S-transferase Gene Family AT1G02950 52.2 3.5e-54 209.5
Sed09g1225 . 24 224 Glutathione S-transferase Gene Family AT1G02950 51.5 1.0e-53 208.0
Sed07g0332 . 6 207 Glutathione S-transferase Gene Family AT1G02950 50.2 9.7e-52 201.4
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.6 1.1e-64 244.2
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT1G02930 56.1 2.3e-59 226.5
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT1G02930 53.6 3.1e-56 216.1
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.1 5.3e-56 215.3
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT1G02930 52.2 7.6e-55 211.5
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 4.8e-65 245.4
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT1G02920 57.1 1.9e-61 233.4
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT1G02920 55.1 9.7e-58 221.1
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT1G02920 55.6 6.3e-57 218.4
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT1G02920 53.1 4.1e-56 215.7
Sed07g0333 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.4 5.3e-69 258.8
Sed07g0332 . 1 214 Glutathione S-transferase Gene Family AT2G47730 59.5 3.9e-64 242.7
Sed09g1224 . 5 214 Glutathione S-transferase Gene Family AT2G47730 55.9 4.0e-61 232.6
Sed09g1225 . 24 231 Glutathione S-transferase Gene Family AT2G47730 55.5 1.5e-60 230.7
Sed09g1223 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.3 9.9e-60 228.0
Sed03g2328 . 2 217 Glutathione S-transferase Gene Family AT3G09270 51.4 9.0e-62 234.6
Sed03g2329 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.5 2.6e-61 233.0
Sed03g2333 . 3 218 Glutathione S-transferase Gene Family AT3G09270 52.9 6.5e-60 228.4
Sed14g0672 . 30 240 Glutathione S-transferase Gene Family AT3G09270 51.2 1.2e-58 224.2
Sed07g0886 . 1 215 Glutathione S-transferase Gene Family AT1G78380 65.6 2.9e-81 299.3
Sed13g0672 . 198 401 Glutathione S-transferase Gene Family AT1G78380 66.8 2.6e-77 286.2
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G78380 68.9 2.6e-77 286.2
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G78380 69.9 6.3e-68 255.0
Sed03g0911 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 5.9e-66 248.4
Sed07g0886 . 7 215 Glutathione S-transferase Gene Family AT1G78370 62.2 1.5e-74 276.9
Sed13g0672 . 7 197 Glutathione S-transferase Gene Family AT1G78370 62.3 1.5e-69 260.4
Sed07g0887 . 7 196 Glutathione S-transferase Gene Family AT1G78370 62.6 1.3e-68 257.3
Sed03g0911 . 7 219 Glutathione S-transferase Gene Family AT1G78370 54.5 4.6e-63 238.8
Sed13g0673 . 7 176 Glutathione S-transferase Gene Family AT1G78370 64.7 3.0e-62 236.1
Sed07g0886 . 1 216 Glutathione S-transferase Gene Family AT1G78340 59.7 2.0e-74 276.6
Sed07g0887 . 1 195 Glutathione S-transferase Gene Family AT1G78340 65.1 1.3e-73 273.9
Sed13g0672 . 1 196 Glutathione S-transferase Gene Family AT1G78340 61.2 6.7e-70 261.5
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G78340 65.3 3.8e-65 245.7
Sed03g0911 . 4 219 Glutathione S-transferase Gene Family AT1G78340 53.2 1.4e-62 237.3
Sed12g0281 . 1 156 Glutathione S-transferase Gene Family AT1G78340 50.3 1.6e-39 160.6
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G78320 50.7 4.4e-57 218.8
Sed13g0673 . 3 176 Glutathione S-transferase Gene Family AT1G78320 55.2 1.9e-47 186.8
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G17180 64.5 2.8e-84 309.3
Sed13g0672 . 198 403 Glutathione S-transferase Gene Family AT1G17180 64.7 1.2e-74 277.3
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G17180 62.8 1.0e-73 274.2
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G17180 67.1 1.4e-67 253.8
Sed03g0911 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.2 2.1e-66 250.0
Sed07g0886 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 1.5e-69 260.4
Sed07g0887 . 2 205 Glutathione S-transferase Gene Family AT1G17190 54.9 1.5e-64 243.8
Sed13g0672 . 3 218 Glutathione S-transferase Gene Family AT1G17190 54.2 9.5e-64 241.1
Sed13g0673 . 1 176 Glutathione S-transferase Gene Family AT1G17190 60.8 2.0e-61 233.4
Sed07g0886 . 3 216 Glutathione S-transferase Gene Family AT3G43800 53.5 3.3e-67 252.7
Sed07g0887 . 3 196 Glutathione S-transferase Gene Family AT3G43800 57.1 3.7e-63 239.2
Sed13g0672 . 3 197 Glutathione S-transferase Gene Family AT3G43800 53.3 3.3e-59 226.1
Sed13g0673 . 1 176 Glutathione S-transferase Gene Family AT3G43800 56.1 9.8e-56 214.5
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G53680 54.2 2.3e-65 246.5
Sed03g0911 . 1 224 Glutathione S-transferase Gene Family AT1G53680 54.8 7.4e-64 241.5
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G53680 58.2 3.4e-61 232.6
Sed13g0672 . 4 197 Glutathione S-transferase Gene Family AT1G53680 54.9 2.5e-59 226.5
Sed13g0673 . 3 176 Glutathione S-transferase Gene Family AT1G53680 54.0 1.4e-49 194.1
Sed01g0019 . 71 242 Glutathione S-transferase Gene Family AT2G02390 66.9 5.0e-61 231.9
Sed01g0017 . 52 222 Glutathione S-transferase Gene Family AT2G02390 66.1 1.6e-59 226.9
Sed12g0248 . 37 209 Glutathione S-transferase Gene Family AT2G02390 50.9 1.9e-47 186.8
Sed12g0249 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0244 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0245 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0246 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0247 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed01g0017 . 11 220 Glutathione S-transferase Gene Family AT2G02380 63.3 1.3e-73 273.9
Sed01g0019 . 30 241 Glutathione S-transferase Gene Family AT2G02380 63.2 6.6e-73 271.6
Sed12g0249 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0244 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0245 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0246 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0247 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed07g1600 . 1 230 Glutathione S-transferase Gene Family AT5G41210 71.3 1.7e-93 340.1
Sed07g1600 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 3.0e-88 323.9
Sed02g0718 . 9 235 Glutathione S-transferase Gene Family AT5G02780 70.6 2.2e-90 329.7
Sed02g0722 . 9 225 Glutathione S-transferase Gene Family AT5G02780 65.8 1.4e-81 300.4
Sed04g1311 . 13 232 Glutathione S-transferase Gene Family AT5G02780 67.1 2.4e-81 299.7
Sed04g2736 . 77 296 Glutathione S-transferase Gene Family AT5G02780 64.4 5.6e-78 288.5
Sed02g0721 . 9 237 Glutathione S-transferase Gene Family AT5G02780 60.2 2.7e-72 269.6
Sed02g0720 . 9 237 Glutathione S-transferase Gene Family AT5G02780 60.2 2.7e-72 269.6
Sed04g2737 . 77 269 Glutathione S-transferase Gene Family AT5G02780 66.7 1.0e-71 267.7
Sed03g3068 . 9 230 Glutathione S-transferase Gene Family AT5G02780 59.8 1.5e-70 263.8
Sed02g0719 . 9 178 Glutathione S-transferase Gene Family AT5G02780 70.2 6.8e-68 255.0
Sed04g2736 . 26 294 Glutathione S-transferase Gene Family AT3G55040 56.3 5.6e-80 295.4
Sed02g0718 . 4 236 Glutathione S-transferase Gene Family AT3G55040 59.7 3.1e-78 289.7
Sed02g0722 . 7 226 Glutathione S-transferase Gene Family AT3G55040 60.2 4.5e-77 285.8
Sed04g2737 . 26 269 Glutathione S-transferase Gene Family AT3G55040 56.3 8.7e-73 271.6
Sed04g1311 . 3 227 Glutathione S-transferase Gene Family AT3G55040 55.8 2.5e-72 270.0
Sed03g3068 . 7 231 Glutathione S-transferase Gene Family AT3G55040 57.3 4.2e-67 252.7
Sed02g0721 . 7 238 Glutathione S-transferase Gene Family AT3G55040 53.8 1.3e-65 247.7
Sed02g0720 . 7 238 Glutathione S-transferase Gene Family AT3G55040 53.8 1.3e-65 247.7
Sed02g0719 . 4 177 Glutathione S-transferase Gene Family AT3G55040 60.3 6.7e-57 218.8
Sed02g0718 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.9 2.1e-93 339.7
Sed02g0722 . 6 228 Glutathione S-transferase Gene Family AT5G02790 69.6 7.4e-91 331.3
Sed04g1311 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.6 1.1e-89 327.4
Sed04g2736 . 71 296 Glutathione S-transferase Gene Family AT5G02790 62.1 2.9e-79 292.7
Sed03g3068 . 6 233 Glutathione S-transferase Gene Family AT5G02790 63.9 5.5e-78 288.5
Sed02g0721 . 6 240 Glutathione S-transferase Gene Family AT5G02790 61.2 2.1e-77 286.6
Sed02g0720 . 6 240 Glutathione S-transferase Gene Family AT5G02790 61.2 2.1e-77 286.6
Sed04g2737 . 71 269 Glutathione S-transferase Gene Family AT5G02790 64.0 1.0e-71 267.7
Sed02g0719 . 1 178 Glutathione S-transferase Gene Family AT5G02790 69.7 2.3e-71 266.5
Sed07g2442 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 3.4e-82 302.4
Sed07g2441 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 4.1e-80 295.4
Sed04g2794 . 1 212 Glutathione S-transferase Gene Family AT1G19570 62.9 1.3e-78 290.4
Sed07g2443 . 1 209 Glutathione S-transferase Gene Family AT1G19570 62.9 1.2e-76 283.9
Sed06g1393 . 60 267 Glutathione S-transferase Gene Family AT1G19570 59.3 7.0e-72 268.1
Sed07g2442 . 226 435 Glutathione S-transferase Gene Family AT1G75270 73.5 1.8e-88 323.2
Sed07g2441 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.3 1.0e-83 307.4
Sed04g2794 . 1 211 Glutathione S-transferase Gene Family AT1G75270 66.0 2.2e-81 299.7
Sed07g2443 . 1 206 Glutathione S-transferase Gene Family AT1G75270 67.1 1.4e-80 297.0
Sed06g1393 . 60 267 Glutathione S-transferase Gene Family AT1G75270 60.3 1.2e-71 267.3
Sed07g2444 . 1 158 Glutathione S-transferase Gene Family AT1G75270 50.2 1.2e-50 197.6
Sed06g1393 . 53 269 Glutathione S-transferase Gene Family AT5G16710 77.9 3.7e-99 359.0
Sed07g2441 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 1.2e-73 274.2
Sed07g2442 . 3 210 Glutathione S-transferase Gene Family AT5G16710 58.2 9.4e-71 264.6
Sed04g2794 . 3 210 Glutathione S-transferase Gene Family AT5G16710 57.7 1.6e-70 263.8
Sed07g2443 . 3 206 Glutathione S-transferase Gene Family AT5G16710 54.9 8.2e-67 251.5
Sed12g1477 . 1 267 Glutathione S-transferase Gene Family AT1G77290 68.9 3.8e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85