Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0019 ATGTGGCATCCTTGTGAATTGAGAATGAGCGGAGGTGATTTGGGCGATCAAAGCAGCATGAGTGAAAATGTTGCGGCGTTGCCTCCGTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTCAGCGTGTTCGAATTGCCCTAAACTTGAAAGGGCTGAATTTCGAGTACAAAGCTGTTGACCTACTCAACGGACACCAATTCACTCCCGAGTACGAAAAGATCAACCCTATCGGTTATGTACCCACTCTCGTGGATGGGGATGTTGTCATTGCCGACTCTTTTGCTATTCTAATGTATTTGGAGGAGAAGTATCCTCACCCTCATCCTCTACTGCCTCCTGATCTTACTAAAAGAGCTCTCAACTATCAGGCTGCAAACATTGTTTCTTCCAGCATACAGCCTCTTCAAAATCTAGCTGTTCTGAAGTACATTGAGCAACAATCTGGCCCACACCAAAAACTTCATTGGGTTCAACGTGCCATCCAAAAAGGTTTTGCAGCACTTGAAAAACTGCTAAAAGATCATGCGGGTAAATTTGCTACAGGGGACGAAATCTTTCTGGCAGACTTGTTTTTGGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGCGTTGACATGTCCAAATTTCCACTTTTAAGCAGGTTGAACGAGGAATACAATGCTATTCCAGCATTTCAAAATGCAGAGCCAGCAAAACAGCCTGATGCTCCTCAAAGCTCTAGCTAA 732 44.4 MWHPCELRMSGGDLGDQSSMSENVAALPPLKLYSYWRSSCSQRVRIALNLKGLNFEYKAVDLLNGHQFTPEYEKINPIGYVPTLVDGDVVIADSFAILMYLEEKYPHPHPLLPPDLTKRALNYQAANIVSSSIQPLQNLAVLKYIEQQSGPHQKLHWVQRAIQKGFAALEKLLKDHAGKFATGDEIFLADLFLAPQIHGAINRFSVDMSKFPLLSRLNEEYNAIPAFQNAEPAKQPDAPQSSS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 321890 328330 + Sed0028209.1 Sed01g0019 699323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0019 243 Pfam Glutathione S-transferase, C-terminal domain 141 226 IPR004046 -
Sed01g0019 243 Gene3D Glutaredoxin 29 112 - -
Sed01g0019 243 FunFam Maleylacetoacetate isomerase 114 241 - -
Sed01g0019 243 PANTHER MALEYLACETOACETATE ISOMERASE 30 238 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Sed01g0019 243 CDD GST_C_Zeta 118 235 IPR034330 -
Sed01g0019 243 SUPERFAMILY GST C-terminal domain-like 110 239 IPR036282 -
Sed01g0019 243 FunFam Glutathione S-transferase Z1 29 113 - -
Sed01g0019 243 CDD GST_N_Zeta 30 102 IPR034333 -
Sed01g0019 243 Gene3D - 113 241 - -
Sed01g0019 243 SFLD Main (cytGST) 30 216 - -
Sed01g0019 243 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 115 240 IPR010987 -
Sed01g0019 243 Pfam Glutathione S-transferase, N-terminal domain 32 108 IPR004045 -
Sed01g0019 243 NCBIfam maleylacetoacetate isomerase 31 238 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Sed01g0019 243 SFLD Glutathione Transferase (cytosolic) 30 216 IPR040079 -
Sed01g0019 243 SUPERFAMILY Thioredoxin-like 28 113 IPR036249 -
Sed01g0019 243 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 28 109 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0019 Sed-Chr1:321890 Sed12g0244 Sed-Chr12:1418675 3.10E-68 dispersed
Sed01g0017 Sed-Chr1:307605 Sed01g0019 Sed-Chr1:321890 4.00E-86 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0019 K01800 - csv:101213302 333.183