Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0019 | ATGTGGCATCCTTGTGAATTGAGAATGAGCGGAGGTGATTTGGGCGATCAAAGCAGCATGAGTGAAAATGTTGCGGCGTTGCCTCCGTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTCAGCGTGTTCGAATTGCCCTAAACTTGAAAGGGCTGAATTTCGAGTACAAAGCTGTTGACCTACTCAACGGACACCAATTCACTCCCGAGTACGAAAAGATCAACCCTATCGGTTATGTACCCACTCTCGTGGATGGGGATGTTGTCATTGCCGACTCTTTTGCTATTCTAATGTATTTGGAGGAGAAGTATCCTCACCCTCATCCTCTACTGCCTCCTGATCTTACTAAAAGAGCTCTCAACTATCAGGCTGCAAACATTGTTTCTTCCAGCATACAGCCTCTTCAAAATCTAGCTGTTCTGAAGTACATTGAGCAACAATCTGGCCCACACCAAAAACTTCATTGGGTTCAACGTGCCATCCAAAAAGGTTTTGCAGCACTTGAAAAACTGCTAAAAGATCATGCGGGTAAATTTGCTACAGGGGACGAAATCTTTCTGGCAGACTTGTTTTTGGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGCGTTGACATGTCCAAATTTCCACTTTTAAGCAGGTTGAACGAGGAATACAATGCTATTCCAGCATTTCAAAATGCAGAGCCAGCAAAACAGCCTGATGCTCCTCAAAGCTCTAGCTAA | 732 | 44.4 | MWHPCELRMSGGDLGDQSSMSENVAALPPLKLYSYWRSSCSQRVRIALNLKGLNFEYKAVDLLNGHQFTPEYEKINPIGYVPTLVDGDVVIADSFAILMYLEEKYPHPHPLLPPDLTKRALNYQAANIVSSSIQPLQNLAVLKYIEQQSGPHQKLHWVQRAIQKGFAALEKLLKDHAGKFATGDEIFLADLFLAPQIHGAINRFSVDMSKFPLLSRLNEEYNAIPAFQNAEPAKQPDAPQSSS | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 321890 | 328330 | + | Sed0028209.1 | Sed01g0019 | 699323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0019 | 243 | Pfam | Glutathione S-transferase, C-terminal domain | 141 | 226 | IPR004046 | - | |
Sed01g0019 | 243 | Gene3D | Glutaredoxin | 29 | 112 | - | - | |
Sed01g0019 | 243 | FunFam | Maleylacetoacetate isomerase | 114 | 241 | - | - | |
Sed01g0019 | 243 | PANTHER | MALEYLACETOACETATE ISOMERASE | 30 | 238 | - | GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER) | |
Sed01g0019 | 243 | CDD | GST_C_Zeta | 118 | 235 | IPR034330 | - | |
Sed01g0019 | 243 | SUPERFAMILY | GST C-terminal domain-like | 110 | 239 | IPR036282 | - | |
Sed01g0019 | 243 | FunFam | Glutathione S-transferase Z1 | 29 | 113 | - | - | |
Sed01g0019 | 243 | CDD | GST_N_Zeta | 30 | 102 | IPR034333 | - | |
Sed01g0019 | 243 | Gene3D | - | 113 | 241 | - | - | |
Sed01g0019 | 243 | SFLD | Main (cytGST) | 30 | 216 | - | - | |
Sed01g0019 | 243 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 115 | 240 | IPR010987 | - | |
Sed01g0019 | 243 | Pfam | Glutathione S-transferase, N-terminal domain | 32 | 108 | IPR004045 | - | |
Sed01g0019 | 243 | NCBIfam | maleylacetoacetate isomerase | 31 | 238 | IPR005955 | GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro) | |
Sed01g0019 | 243 | SFLD | Glutathione Transferase (cytosolic) | 30 | 216 | IPR040079 | - | |
Sed01g0019 | 243 | SUPERFAMILY | Thioredoxin-like | 28 | 113 | IPR036249 | - | |
Sed01g0019 | 243 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 28 | 109 | IPR004045 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0019 | Sed-Chr1:321890 | Sed12g0244 | Sed-Chr12:1418675 | 3.10E-68 | dispersed | |
Sed01g0017 | Sed-Chr1:307605 | Sed01g0019 | Sed-Chr1:321890 | 4.00E-86 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0019 | K01800 | - | csv:101213302 | 333.183 |