Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0021 ATGGACGGGCAGGTCTCCATTACCAATGGCACAGACGACACAATCGTGTGCTATGCGCCAACCATGATCACAACAAATGGGGTGTGGCAAGGCGACAACCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGCTAACCATGGTGGTTGTCATGACTCGCATTTTGGTTTTCCTCTTGAAACCCTTTCGCCAACCTCGAGTCATCTCTGAAATTCTGGGTGGAGTTATTTTGGGGCCTTCCGTTCTGGGCAGGAATCCTAAATTTGCAAACGCCGTCTTTCCATTAAGAAGTGTGATGGTGCTTGAAACCATGGCAAACGTGGGTCTTCTCTACTTCCTCTTCCTGGTTGGCGTCGAGATGGATCTCTCCGTCATTCGTCGAACCGGAAAGAAGGCAATGGCATTAGCCGTAGCAGGAATGATCCTTCCTTTTGCAATCGGAGTGGCCTTCTCATTTGCAATGCACAAAACTGATGAAAACTGGAACTGCAACACTTACATCATGTTCCTCGGCATTGCCCTCTCTGTCACCGCTTTCCCAGTGCTTGCTAGAATCCTTGCAGAGCTTAAACTCATCAATTCCGAGCTTGGAAGGATAGCCATGGCTTCTGCCCTTTTCAATGACATGTGTGCTTGGGCTCTCTTAGCCTTGGCCATTGCCTTATCCGAGAATGACTCTTCTTCTTTAGCTTCCTTGTGGGTTGTATTGTCCAGTTTCGGCTTTGTTTTGTTCTGCATCTTCTTCATCAGACCCTTGATCTCGTGGATGATTCGGAGAACCCCGGAAGGGGAGAGTATCAGTGATTTCTACATTTGTATGATCCTCACGGGGGTTATGCTCTCAGGGTTTGTTACAGATGCTATTGGAACACACTCAGTTTTTGGGGCTTTTATGTTTGGCTTGGTTATCCCAAATGGATCACTTGGAGTGGCTTTAATCGAGAAACTTGAGGATTTTGTTTCAGGCCTTTTGTTACCTCTCTTTTTTGCCATAAATGGACTTAAGACTAACGTTACTAGCATAGATGGAGTCATGACTTGGATATTTGTTCTATTTATCACCCTTCTTGCTTTTATTGGCAAGGTTATTGGAACTTTCATTGCCTCCATTTGTTATAAGATGACCTATCGTGAAGGTATCACATTGGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATCATCATCCTCAACGTTGGAAAGGACCAAAAGGTTTTAGATGATAAAGCCTTCACAATTATGGTGATAGTATCCCTCATTATGACAAGCCTAATAACACCTATAGTTAGCATACTCTATAAGCCAACAAGAAGATTTCTACCGTATAAGAAACGGACAATTCAAGCATCACAACCAGATTCAGAGTTGAGAATATTAGTTTGTATTCACACACCTCGAAATGTCCCAACGATCATCAACCTCCTTGACGCCTCCCACCCAACCAAGAAATCCCCAATTTGCATTTATGTACTGCACTTGGTTGAACTCACCGGCCGATCCTCCGCCATGCTCATTGTCCATAACACTAGAAAATCAGGCCGCCCTGCACTGAATCGAACCCAAGCTCAATCAGATCACATCATCAACGCATTCGAGAACTACGAACAACATGTCGATTACGTTTCTGTACAGCCCCTTACAGCAATCTCACCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGACAAACGTTCTGCCTTCATAATCATCCCATTTCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGGTTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCATAGGAATATTAGTCGATCGAGGCTTAAACGGCTCAAATCGAGCTGCACCGAACAAGGCATCTCACTACAACATAATAGTTTTGTTCTTCGGTGGACAAGACGACAGAGAAGCTCTATCATACGCATGGAGAATGTCAGAAAATCCAGGAGTGAGCTTAACCGTTATGCGATTCATTGCAGCCGAACAAACAGGAGAACCAAAACACGAAGCATATGAATACGAAGTTTCAACAACGGGAGCAGAAATCGAAAGACAAAGGAAACTCGACGAAGATTACATAAACGAATTCAAATCAAAGAATGTAAATATGGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGTGAGGAGACAGTAGCTGCGATAAGATCAATGGATGATGCTCACGATTTGTTCATCGTGGGGCGAGGAGAAGCGCAGATGTCGCCACTTACCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTCGGAGCAATCGGCGATTTGTTAGCTTCGTTGGATTTTGCAGCGACTGCTTCAGTTTTGGTAGTGCAACAGTTCTCAGCAGCAATGGCGACCGAGAATGGAGAAGATGAAGATACTTCACCACGTAACCATGATCTAGGTGAGACCTACCACAGCTTGAGATCCCTGAATATAGGCCAACATTCTCCATCAAGGGCTCAAAATATTTACGATACATGA 2514 44.51 MDGQVSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRNPKFANAVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMALAVAGMILPFAIGVAFSFAMHKTDENWNCNTYIMFLGIALSVTAFPVLARILAELKLINSELGRIAMASALFNDMCAWALLALAIALSENDSSSLASLWVVLSSFGFVLFCIFFIRPLISWMIRRTPEGESISDFYICMILTGVMLSGFVTDAIGTHSVFGAFMFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAINGLKTNVTSIDGVMTWIFVLFITLLAFIGKVIGTFIASICYKMTYREGITLGLLMNTKGLIEIIILNVGKDQKVLDDKAFTIMVIVSLIMTSLITPIVSILYKPTRRFLPYKKRTIQASQPDSELRILVCIHTPRNVPTIINLLDASHPTKKSPICIYVLHLVELTGRSSAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDYVSVQPLTAISPYSTMHEDICNLAEDKRSAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSIGILVDRGLNGSNRAAPNKASHYNIIVLFFGGQDDREALSYAWRMSENPGVSLTVMRFIAAEQTGEPKHEAYEYEVSTTGAEIERQRKLDEDYINEFKSKNVNMESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGEAQMSPLTAGLTDWSECPELGAIGDLLASLDFAATASVLVVQQFSAAMATENGEDEDTSPRNHDLGETYHSLRSLNIGQHSPSRAQNIYDT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 332821 335816 + Sed0008614.1 Sed01g0021 699325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0021 837 Gene3D - 41 440 IPR038770 -
Sed01g0021 837 FunFam Cation/H(+) antiporter 15 41 441 - -
Sed01g0021 837 PANTHER CATION/H + ANTIPORTER 17 791 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed01g0021 837 Pfam Sodium/hydrogen exchanger family 53 430 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed01g0021 837 MobiDBLite consensus disorder prediction 818 837 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0021 Sed-Chr1:332821 Sed13g0816 Sed-Chr13:6035580 2.00E-207 dispersed
Sed01g4070 Sed-Chr1:69646046 Sed01g0021 Sed-Chr1:332821 1.40E-98 transposed
Sed01g0021 Sed-Chr1:332821 Sed05g3866 Sed-Chr5:46187082 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0021 K26731 - csv:101219265 1409.05