Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0024 ATGGCTACCCTTCATTTGTTCCTAACTCTGTTTGTCGGTGCTCTGCATCTCTCCGCCGCCGCGGATATCGCCGCCGCCTGCATCGCCACCTGCTTCCCGGACCCATGCGAAGCCTCCATCTCCCGATCGAAACGCCTCCCCCCAAACCCAACGCCCCTCCAGATTGTCCAAACAGCCGTTTGGGTCTCGTGGGAGAATCTCCAAACAGCCAGATCCATGGTGGAGGCCATTCTCGATTCCTCCGCGGGGAACCCCAACCGCACCGCCGCCGCCGTTAGCTGTCTGGAGGGGCTGGCTTACTCGGACTACCGAATTTGGCTTTCCAACCGCGCCATTCCGAGCGGAGGGATGAAGGACGCCCGCGCGTGGCTCAGCGCCTCCCTTCTCTACCAGACCGGTTGCTGGTCGGGCCTCAGGAAAGTGAACGACACGCGCGACGTGCTCCAAACCATGTCCTACCTCTACCACTTGACCCTACTCTCCAGCAACGCGCTTTGCATGGCCATGGCCTACGATATCTACGGCAACGACACCCACGCGTGGGCCCCGCCAAAGACGGAGCGAGATGGCTTCTGGGAAAACCCTGGCTCGGGTGGCCCGTCGCCCCGGTCGGATTCCGGGTTTCCGGAAAAGACGGCGGCGAACGCCACGGTTTGCAAGGATGGGAGTGGGGGAGGGGGTTGTTTGAGGACGGTGCAGGAGGCGGTGGAGGCGGCGCCGCCGAATGCCACGGCCAGATTTGTCATCCACATAAAAGAAGGGGTTTACGAGGAAATTGTGAGAGTGCCATTGGAGAAGAGGAATTTGGTATTTTTGGGAGATGGGATGGGCAAATCGGTAATTACAGGATCTTTGAATGCCGGCCAGCCAGGAATGTCCACGTATAATTCAGCTACAGTGGGTGTGCTTGGGGATGGATTCATGGCTAGTGGTTTGACCATTGAAAACACAGCAGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCTGTCATTCAAGACTGTGAGTTTATAGGCAACCAAGACACTCTCTATGCTCACTCCCTCCGACAGTTCTACAAATCCTGTCGGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCTGCGACCATCTTCCAGGACTGCGAGATCCTTGTACGCCCCCGACAACTTAAGCCCGAGAAAGGTGAGAACAATGCCGTTACTGCTCACGGCCGGACCGACCCTGCTCAATCGACTGGGTTCGTGTTCCAAAACTGCCTGATTAATGGTACTGAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTACTCGAGGACGGTGTTCATACACTGTAATCTCGAGGCTCTCATTTCGCCCCCGGGGTGGATGCCATGGACTGGGGACTTCGCTTTAAAGACGCTCTACTATGGGGAGTTTGAGAATTCAGGGGAAGGTTCGAAGCTGTCGGAGCGAGTCGGGTGGAGTAGCCAGATTCCAGCACAGCATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGGTGAATGGATTCCTTCATCATCTCAGTAA 1590 55.28 MATLHLFLTLFVGALHLSAAADIAAACIATCFPDPCEASISRSKRLPPNPTPLQIVQTAVWVSWENLQTARSMVEAILDSSAGNPNRTAAAVSCLEGLAYSDYRIWLSNRAIPSGGMKDARAWLSASLLYQTGCWSGLRKVNDTRDVLQTMSYLYHLTLLSSNALCMAMAYDIYGNDTHAWAPPKTERDGFWENPGSGGPSPRSDSGFPEKTAANATVCKDGSGGGGCLRTVQEAVEAAPPNATARFVIHIKEGVYEEIVRVPLEKRNLVFLGDGMGKSVITGSLNAGQPGMSTYNSATVGVLGDGFMASGLTIENTAGPDAHQAVAFRSDSDLSVIQDCEFIGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSATIFQDCEILVRPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMSLYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALISPPGWMPWTGDFALKTLYYGEFENSGEGSKLSERVGWSSQIPAQHVFSYSVENFIQGGEWIPSSSQ 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 357687 364193 + Sed0008441.1 Sed01g0024 699328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0024 529 CDD PMEI-like_3 30 172 - -
Sed01g0024 529 FunFam Pectinesterase 209 529 - -
Sed01g0024 529 SUPERFAMILY Pectin lyase-like 212 526 IPR011050 -
Sed01g0024 529 Pfam Pectinesterase 215 520 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed01g0024 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 170 IPR035513 -
Sed01g0024 529 Gene3D - 210 529 IPR012334 -
Sed01g0024 529 NCBIfam pectinesterase inhibitor domain 3 148 IPR006501 GO:0004857(InterPro)
Sed01g0024 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 167 IPR035513 -
Sed01g0024 529 SMART PMEI_2 18 167 IPR006501 GO:0004857(InterPro)
Sed01g0024 529 FunFam Probable pectinesterase/pectinesterase inhibitor 51 21 170 - -
Sed01g0024 529 MobiDBLite consensus disorder prediction 185 210 - -
Sed01g0024 529 PANTHER PECTINESTERASE 8 526 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed01g0024 529 Pfam Plant invertase/pectin methylesterase inhibitor 22 167 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0024 Sed-Chr1:357687 Sed07g1118 Sed-Chr7:8229726 1.80E-84 dispersed
Sed01g0024 Sed-Chr1:357687 Sed02g1571 Sed-Chr2:51316048 2.50E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0024 - - - 0.0