Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0026 | ATGGCCGATGAAGTTCAGAATGACCTGATTGATCAGGTCGCAGATATCGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGGCTGATGACTCTGTTGACAAGCTAGCCCAGAAAACTGAAACTTTGTCAGTTTCTGACGCTTTAGAGACTAGTGCATTTTCTGGACTCAAAAAGAAGAAGAAAAAACCAGTAGAAGACAGCTCCTTGAATCACGATGGTGCAGATGTCACAGAGGATTTGGAAGATCAAGCAGGGGAAAATGAGGAACAAAAGGAAACTGTTCTACAGCATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGGCGAGTATTCAACATTCTTAGAGAGAATAACCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGGGAAGGCACCAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAACAGAGATTAGTTGTTAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTACGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAAAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCCGGACGATCAGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAAGGCCGGGACATGA | 813 | 44.53 | MADEVQNDLIDQVADIAPFDPTKKKKKKKVVLQDPADDSVDKLAQKTETLSVSDALETSAFSGLKKKKKKPVEDSSLNHDGADVTEDLEDQAGENEEQKETVLQHRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 391269 | 395551 | - | Sed0020217.1 | Sed01g0026 | 699330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0026 | 270 | MobiDBLite | consensus disorder prediction | 62 | 86 | - | - | |
Sed01g0026 | 270 | MobiDBLite | consensus disorder prediction | 62 | 101 | - | - | |
Sed01g0026 | 270 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 219 | 254 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0026 | 270 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 115 | 222 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0026 | 270 | FunFam | Eukaryotic translation initiation factor 2 subunit | 113 | 255 | - | - | |
Sed01g0026 | 270 | Gene3D | - | 113 | 255 | - | - | |
Sed01g0026 | 270 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 24 | 257 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER) | |
Sed01g0026 | 270 | SMART | eIF2Bneu4 | 140 | 249 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0026 | 270 | Pfam | Domain found in IF2B/IF5 | 139 | 248 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0026 | Sed-Chr1:391269 | Sed04g0241 | Sed-Chr4:1790509 | 5.50E-130 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0026 | K03238 | - | csv:101220978 | 491.886 |