Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0035 ATGGCCGATGCTGAGGATATCCAACCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCCCCTAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGGCACACGGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACTTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACGTTCTACAATGAACTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAAATGACTCAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCCCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTTACTGATGCTTTGATGAAGATTCTTACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTTCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTTTGAGCAGGAACTCGAGACTGCTAAGAGTAGCTCCTCGATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCGGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCAGACCGAATGAGCAAAGAGATCACTGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCACTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTACGATGAATCTGGCCCGTCCATCGTCCACAGAAAGTGCTTCTAA 1134 46.83 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 419442 422754 + Sed0001824.1 Sed01g0035 699339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0035 377 PRINTS Actin signature 51 62 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 63 85 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 142 161 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 28 37 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 117 130 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 238 254 IPR004000 -
Sed01g0035 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Sed01g0035 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed01g0035 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed01g0035 377 Gene3D - 10 371 - -
Sed01g0035 377 Pfam Actin 5 377 IPR004000 -
Sed01g0035 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed01g0035 377 FunFam Major actin 261 340 - -
Sed01g0035 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed01g0035 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed01g0035 377 FunFam Putative actin-related protein 5 341 369 - -
Sed01g0035 377 PANTHER ACTIN 8 369 IPR004000 -
Sed01g0035 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sed01g0035 377 SMART actin_3 7 377 IPR004000 -
Sed01g0035 377 FunFam Actin, muscle 182 273 - -
Sed01g0035 377 Gene3D - 140 340 - -
Sed01g0035 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0035 Sed-Chr1:419442 Sed02g0367 Sed-Chr2:40502792 1.10E-213 dispersed
Sed01g0035 Sed-Chr1:419442 Sed10g0485 Sed-Chr10:3084451 3.90E-219 wgd
Sed01g0035 Sed-Chr1:419442 Sed05g3846 Sed-Chr5:46087412 3.90E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0035 K10355 - csv:101220617 756.518