Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0035 | ATGGCCGATGCTGAGGATATCCAACCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCCCCTAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGGCACACGGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACTTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACGTTCTACAATGAACTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAAATGACTCAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCCCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTTACTGATGCTTTGATGAAGATTCTTACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTTCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTTTGAGCAGGAACTCGAGACTGCTAAGAGTAGCTCCTCGATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCGGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCAGACCGAATGAGCAAAGAGATCACTGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCACTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTACGATGAATCTGGCCCGTCCATCGTCCACAGAAAGTGCTTCTAA | 1134 | 46.83 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 419442 | 422754 | + | Sed0001824.1 | Sed01g0035 | 699339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0035 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Sed01g0035 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Sed01g0035 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Sed01g0035 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Sed01g0035 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Sed01g0035 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Sed01g0035 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 179 | - | - | |
Sed01g0035 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Sed01g0035 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Sed01g0035 | 377 | Gene3D | - | 10 | 371 | - | - | |
Sed01g0035 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Sed01g0035 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Sed01g0035 | 377 | FunFam | Major actin | 261 | 340 | - | - | |
Sed01g0035 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Sed01g0035 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Sed01g0035 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
Sed01g0035 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | - | |
Sed01g0035 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Sed01g0035 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Sed01g0035 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
Sed01g0035 | 377 | Gene3D | - | 140 | 340 | - | - | |
Sed01g0035 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0035 | Sed-Chr1:419442 | Sed02g0367 | Sed-Chr2:40502792 | 1.10E-213 | dispersed | |
Sed01g0035 | Sed-Chr1:419442 | Sed10g0485 | Sed-Chr10:3084451 | 3.90E-219 | wgd | |
Sed01g0035 | Sed-Chr1:419442 | Sed05g3846 | Sed-Chr5:46087412 | 3.90E-219 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0035 | K10355 | - | csv:101220617 | 756.518 |