Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0035 ATGGCCGATGCTGAGGATATCCAACCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCCCCTAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGGCACACGGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACTTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACGTTCTACAATGAACTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAAATGACTCAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCCCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTTACTGATGCTTTGATGAAGATTCTTACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTTCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTTTGAGCAGGAACTCGAGACTGCTAAGAGTAGCTCCTCGATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCGGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCAGACCGAATGAGCAAAGAGATCACTGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCACTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTACGATGAATCTGGCCCGTCCATCGTCCACAGAAAGTGCTTCTAA 1134 46.83 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 419442 422754 + Sed0001824.1 Sed01g0035 699339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0035 377 PRINTS Actin signature 51 62 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 63 85 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 142 161 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 28 37 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 117 130 IPR004000 -
Sed01g0035 377 PRINTS Actin signature 238 254 IPR004000 -
Sed01g0035 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Sed01g0035 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed01g0035 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed01g0035 377 Gene3D - 10 371 - -
Sed01g0035 377 Pfam Actin 5 377 IPR004000 -
Sed01g0035 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed01g0035 377 FunFam Major actin 261 340 - -
Sed01g0035 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed01g0035 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed01g0035 377 FunFam Putative actin-related protein 5 341 369 - -
Sed01g0035 377 PANTHER ACTIN 8 369 IPR004000 -
Sed01g0035 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sed01g0035 377 SMART actin_3 7 377 IPR004000 -
Sed01g0035 377 FunFam Actin, muscle 182 273 - -
Sed01g0035 377 Gene3D - 140 340 - -
Sed01g0035 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0035 K10355 - - csv:101220617 756.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0035 Sed-Chr1:419442 Sed02g0367 Sed-Chr2:40502792 1.10E-213 dispersed
Sed01g0035 Sed-Chr1:419442 Sed10g0485 Sed-Chr10:3084451 3.90E-219 wgd
Sed01g0035 Sed-Chr1:419442 Sed05g3846 Sed-Chr5:46087412 3.90E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 9.4e-213 736.9
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.2e-212 736.5
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 1.2e-212 736.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.6e-212 736.1
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.1e-212 735.7
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.6e-212 734.9
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 6.1e-212 734.2
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 8.0e-212 733.8
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT2G37620 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT2G37620 99.2 8.9e-70 261.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 6.5e-214 740.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.9e-213 739.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.2e-213 738.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 736.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 2.7e-212 735.3
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G59370 95.5 6.1e-212 734.2
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 4.4e-210 728.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-209 726.5
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G59370 92.1 2.5e-80 297.0
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G59370 97.6 4.4e-69 259.6
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.9e-214 741.9
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 8.5e-214 740.3
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.2e-213 737.3
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-212 736.5
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 2.7e-212 735.3
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.0e-210 729.2
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.7e-210 727.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 7.5e-210 727.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G46520 92.7 1.1e-80 298.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G46520 97.6 4.4e-69 259.6
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 7.7e-215 743.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 743.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.1e-213 740.0
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 738.4
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 4.2e-213 738.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 735.7
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.7e-212 735.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 4.7e-212 734.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 6.1e-212 734.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G12110 90.9 5.6e-80 295.8
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G12110 98.4 2.0e-69 260.8
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-208 722.2
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.1e-208 721.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 9.1e-208 720.3
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 719.5
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.7e-207 718.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 4.5e-207 718.0
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.0e-206 716.8
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.7e-206 716.1
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G18780 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G18780 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 8.3e-209 723.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.4e-208 723.0
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 3.1e-208 721.8
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.1e-208 721.5
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 721.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 9.1e-208 720.3
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.6e-207 719.5
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.5e-207 718.4
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 5.9e-207 717.6
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT1G49240 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT1G49240 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 4.1e-216 748.0
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 6.5e-214 740.7
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 1.5e-213 739.6
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.6e-212 736.1
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.1e-212 735.7
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 3.6e-212 734.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 6.1e-212 734.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.2e-211 731.1
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G09810 94.4 3.4e-210 728.4
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G09810 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G09810 98.4 2.6e-69 260.4
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT2G19760 80.2 2.2e-60 229.2
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 4.6e-58 221.5
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.3e-55 213.4
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 9.1e-54 207.2
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 7.7e-53 204.1
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.5e-59 224.6
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.0e-57 218.8
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 4.8e-55 211.5
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 5.3e-54 208.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.2e-52 202.6
Sed11g0036 . 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 152.1
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 9.0e-57 217.2
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 1.2e-56 216.9
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29340 72.4 1.7e-55 213.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 7.9e-53 204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276