Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0040 ATGAAAGCTGAAAATAAAGCTTTGTGGATTGTGATTTTGATTCAAATAATATACGCCGGCATGTTTCTGCTCTCGAAGGCTGCATTTGACGGCGGAATGAACAATTTCGTCTTCACTTTCTATCGCCAGGCGACCGCCACCGTCTTTCTTTCTCCCATAACCTTCTTCTTCCAACGCAAAAATGCCCCACCCTTGACGTTCCTCACCTTCTGCAACATTTTTATGCTTTCCTTATTCGGAATATCCATATCTTTAAATTTGTATGGGATTGCTCTTGTGTACACGTCCGCAACGCTGGCCGCAGCCACTACCAATTGTCTTCCTGTCATCACCTTCTTCGTTGCCCTCTTACTTAGGATGGAGGTGTTGAGGTTAAAGTCCATAGCAGGAATGGGAAAGGTTGCAGGAATACTTTTGTGTGTTGGTGGAGTGGGGGTATTGGCATTTTACAAAGGCCCTCAATTCAACTGGTTTAACCATCATCATCTCTTTTCTATCCATAATGCCAAACACACCCATTCTTCTACTCCTCAATTCCCCAACTCTTGGTTGAAGGGTTGCTTTTTGATGCTTTCTTCCAATGCTTTATGGGGTATTTGGATTGTTCTTCAGGCATTTGTATTGAAAAGCTATCCTTCAAAGCTTTTGATGACAAATCTTCAGTGCCTGTTAAGTTCATTTCAAACATTTGCTATGGCTATCGCAATGGAGAGAGATCCTCAGCAATGGAAACTCGGCTGGAATGTTAGGCTTCTCGCAGTGGCATATTGTGGGATTGTGGTGACGGCAGGAACATATTATCTTCAAACATGGGTTATTGAGAAGAAAGGGCCAGTTTTTCTGGCCATGTCCACACCCTTTTCTCTTCTCATTACTACTGCCTTTTCTGCTATCTTTTTTGGCGAAAGTATCACTCTTGGAAGTACTTTAGGAGGGATTTTACTGGTGGGAGGGCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAGATAAGTGAAAGATTGAAAGAAGGTGGCGAAGAATGCAATAATATGCAAGACAAAGAGCTCACAAAATTAGAAAATCAAAATTCATCTTCTGTGGAAAATGTCTGA 1098 41.99 MKAENKALWIVILIQIIYAGMFLLSKAAFDGGMNNFVFTFYRQATATVFLSPITFFFQRKNAPPLTFLTFCNIFMLSLFGISISLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRLKSIAGMGKVAGILLCVGGVGVLAFYKGPQFNWFNHHHLFSIHNAKHTHSSTPQFPNSWLKGCFLMLSSNALWGIWIVLQAFVLKSYPSKLLMTNLQCLLSSFQTFAMAIAMERDPQQWKLGWNVRLLAVAYCGIVVTAGTYYLQTWVIEKKGPVFLAMSTPFSLLITTAFSAIFFGESITLGSTLGGILLVGGLYFVLWGKSKEQKISERLKEGGEECNNMQDKELTKLENQNSSSVENV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 436529 442732 - Sed0006768.1 Sed01g0040 699344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0040 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 328 - -
Sed01g0040 365 MobiDBLite consensus disorder prediction 338 365 - -
Sed01g0040 365 PANTHER WAT1-RELATED PROTEIN 11 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed01g0040 365 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020(InterPro)
Sed01g0040 365 Pfam EamA-like transporter family 7 134 IPR000620 GO:0016020(InterPro)
Sed01g0040 365 MobiDBLite consensus disorder prediction 350 365 - -
Sed01g0040 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0040 Sed-Chr1:436529 Sed05g3837 Sed-Chr5:45994624 8.10E-161 dispersed
Sed11g1352 Sed-Chr11:29568240 Sed01g0040 Sed-Chr1:436529 2.60E-82 transposed
Sed13g0408 Sed-Chr13:2688284 Sed01g0040 Sed-Chr1:436529 2.00E-53 transposed
Sed01g0040 Sed-Chr1:436529 Sed10g0481 Sed-Chr10:3062980 2.70E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0040 - - - 0.0