Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0043 ATGGCGAAATCAGCAATGAAGGCTTTTGGATGGGCTGCGCGTGATGCATCTGGGTCACTCTCTCCCTTCCATTTCTCTCGAAGGGAAAATGGTGAGGATGATGTCAGTATCAAAGTCCTTTACTGTGGGGTTTGCCATTCTGATCTTCATTTGCTCAAGAATGATTGGGGCGTCACGAATTACCCAATAGTTCCAGGGCATGAGATTGTGGGTGTTGTGACTTCTGTGGGGAATAATGTGGTGAAATTCAAAGCGGGCGATCAAGTCGGGGTGGGTGTCATAGTTGGATCTTGCAAAAGTTGCCAAAATTGTGAACAGGACTTGGAGAATTACTGTCCCAAGATGGTATATACTTACAACTCTCATTCATATGATGGAGCTAAGACTTACGGTGGTTACTCCGATAAGATCGTCGTCGATCAACATTTTGTGCTTCGATTTCCTGACAACTTACCTCTTGATGCGGGTGCTCCACTTCTATGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTCAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGACTTGGTCATGTTGCTGTCAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACGGTCATTAGTACCTCTCCTAAAAAGAAGGAGGAAGCCATCGACAGGCTCGGCGCCGATGCTTTTGTTGTCTCGACTGATCCTGCAGAATTGAAGGCTGCCATGGGGACGATGGATTACATTATCGACACGGTATCCGCTATCCATGCTCTTGCTCCATTGCTTGGTCTGCTAAAGCTCAATGGAAAGTTGGTCACTGTGGGTTTACCCAACAAGCCACTAGATCTGCCAGTTGCTGCTATTGTTCTGGGGAGGAAGATGGTTGGTGGGAGCAACTTTGGAGGGCTGAAAGAGACACAAGAAATGTTGGATTTCTGTGCTAAACACAACATCACAGCAGATATTGAGCTCATTCAGATGGACGACATTAACACGGCCATCAAACGGCTTGAGAAAGCCGATGTTCGATATCGGTTCGTGATCGACATTGGAAACTCCCTGAAATAG 1062 46.05 MAKSAMKAFGWAARDASGSLSPFHFSRRENGEDDVSIKVLYCGVCHSDLHLLKNDWGVTNYPIVPGHEIVGVVTSVGNNVVKFKAGDQVGVGVIVGSCKSCQNCEQDLENYCPKMVYTYNSHSYDGAKTYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTQSGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPKKKEEAIDRLGADAFVVSTDPAELKAAMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLDLPVAAIVLGRKMVGGSNFGGLKETQEMLDFCAKHNITADIELIQMDDINTAIKRLEKADVRYRFVIDIGNSLK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 454981 457210 + Sed0015642.1 Sed01g0043 699347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0043 353 Pfam Alcohol dehydrogenase GroES-like domain 31 149 IPR013154 -
Sed01g0043 353 CDD CAD1 9 347 IPR047109 GO:0016616(InterPro)
Sed01g0043 353 FunFam Cinnamyl alcohol dehydrogenase 162 318 - -
Sed01g0043 353 Gene3D - 162 318 - -
Sed01g0043 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 316 IPR036291 -
Sed01g0043 353 SMART PKS_ER_names_mod 18 346 IPR020843 GO:0016491(InterPro)
Sed01g0043 353 Gene3D - 11 348 - -
Sed01g0043 353 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Sed01g0043 353 Pfam Zinc-binding dehydrogenase 189 312 IPR013149 -
Sed01g0043 353 PANTHER ALDEHYDE REDUCTASE 6 351 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed01g0043 353 SUPERFAMILY GroES-like 15 180 IPR011032 -
Sed01g0043 353 FunFam probable cinnamyl alcohol dehydrogenase 11 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0043 Sed-Chr1:454981 Sed14g1014 Sed-Chr14:19661056 4.30E-119 dispersed
Sed01g0043 Sed-Chr1:454981 Sed10g0805 Sed-Chr10:5827449 1.30E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0043 K00083 - csv:101205228 571.237