Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0062 ATGTGTTCTAAATCCCAAGTCCCATTGAACCCACAAGCTTTGTTTGAAGATATTCAAGATCATCAACAAGCATCATCACAATCACCTCATTCTCAAATGGGATTCTTTTCTTTCCCTTCAATGTCTCAACCATTAATCCATTCTCCTTCCCCTCCATTGGAGCCTCCCAATTTCTCAATTTCCAATAATATCATACAAAATAGCCTCTCTCAAACCCTATTTTCTTCTTTTTTGCCCCTCAAGCCCTCCCATTCCTATGATTTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAGAAGTTGATGAGTGGGAAGAGAAATGAGTATCAATTGGGCGTGTCAAGAATGAAGATGAAGAAGATGAAGGGAAGAAGAAAGGTGAGAGAGCCAAGATTCTCATTCAAGACCATGAGCGATGTCGATGTTCTCGATGATGGTTACAAATGGCGAAAGTATGGACAGAAAGTCGTAAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCAGTGTAGGGTAAAGAAAAGAGTAGAGAGATTAGGTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACACATTCATTCTCCTTCCCATGACTCTGAAGACTCTCAATCTCAAACCCATCTCAACAATAATTTCTTTTGGTAA 702 40.17 MCSKSQVPLNPQALFEDIQDHQQASSQSPHSQMGFFSFPSMSQPLIHSPSPPLEPPNFSISNNIIQNSLSQTLFSSFLPLKPSHSYDFAPQHLLSLQTSTPNLWPWGEIGEKLMSGKRNEYQLGVSRMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDQCRVKKRVERLGEDPRMVITTYEGRHIHSPSHDSEDSQSQTHLNNNFFW 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 643492 646203 - Sed0014277.1 Sed01g0062 699366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0062 233 Gene3D WRKY domain 142 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0062 233 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0062 233 MobiDBLite consensus disorder prediction 209 233 - -
Sed01g0062 233 FunFam WRKY transcription factor 57 141 215 - -
Sed01g0062 233 SMART WRKY_cls 155 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0062 233 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0062 233 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0062 233 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 220 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0062 Sed-Chr1:643492 Sed02g1819 Sed-Chr2:52807268 4.00E-36 dispersed
Sed01g0062 Sed-Chr1:643492 Sed01g0063 Sed-Chr1:643492 1.30E-98 tandem
Sed01g0062 Sed-Chr1:643492 Sed10g0448 Sed-Chr10:2821915 1.20E-19 wgd
Sed01g0062 Sed-Chr1:643492 Sed05g3824 Sed-Chr5:45835783 1.60E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37071 PF03106 WRKY 3.10E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0062 - - - 0.0