Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0080 ATGTCATCCTCATCGTCGAATTCGCCATGTGCGGCGTGCAAATGCCTGCGGCGAAAATGCACACAAGAGTGCGTATTCGCGCCTTATTTCCCACCGGATCAGCCCCAGAAATTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTGACCAAGCTTCTCAACGAGCTCAGCGCCAATCAGCGCGAGGACGCGGTCAACTCGCTAGCCTTCGAGGCCGAATTCCGCTTGCGCGACCCGGTCTACGGCTGCGTGGGCCTTATCTCCATCCTCCAACACAAGCTGAAGCAGATGCAAAACGACCTCTACAATGCCAAAAAGGAACTCGCTCATTACATTGGCCCACAAGCGCTTCTCCCCCCTCCCGTGCTCCCCTACGCCTCGTCTCAGCAGCAAATGCAGCTTCTGTTCGACGCCCAGATGGCCAGGGATCAGGACATGGTTAGAGCGTATGAGATGAAACAATCTCAACAACATCATTCGCATCTGCCATTCAATGGGTTTGATGCGGTGGTCGATGGCGACCGAGGGTTCGATCCAATGAACTCCGCCTCGGGTTTGACGTTGGGGACTTTTCTGGAGAATAACAATAACAGCTACCAAGCAGAACAATCTCATCATCCTAACCTGAATCTTCAGGTACAGTTCTTTCTTCAGCCTCAACAAACGCAAGTTCAACAACAAATCCACAAGCCAGAAGCCACTGCAGACGAGGGTAGGAATATTAACATTGGCCCATCTTGTTAA 747 52.48 MSSSSSNSPCAACKCLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELSANQREDAVNSLAFEAEFRLRDPVYGCVGLISILQHKLKQMQNDLYNAKKELAHYIGPQALLPPPVLPYASSQQQMQLLFDAQMARDQDMVRAYEMKQSQQHHSHLPFNGFDAVVDGDRGFDPMNSASGLTLGTFLENNNNSYQAEQSHHPNLNLQVQFFLQPQQTQVQQQIHKPEATADEGRNINIGPSC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 743315 744606 + Sed0021614.1 Sed01g0080 699384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0080 248 Coils Coil 88 108 - -
Sed01g0080 248 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Sed01g0080 248 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Sed01g0080 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0080 Sed-Chr1:743315 Sed12g2463 Sed-Chr12:34257423 1.30E-40 dispersed
Sed03g2755 Sed-Chr3:43982426 Sed01g0080 Sed-Chr1:743315 1.50E-48 transposed
Sed01g0080 Sed-Chr1:743315 Sed05g3367 Sed-Chr5:42875651 8.70E-74 wgd
Sed01g0080 Sed-Chr1:743315 Sed05g3791 Sed-Chr5:45612942 1.30E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37074 PF03195 LOB 1.40E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0080 - - - 0.0