Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0080 | ATGTCATCCTCATCGTCGAATTCGCCATGTGCGGCGTGCAAATGCCTGCGGCGAAAATGCACACAAGAGTGCGTATTCGCGCCTTATTTCCCACCGGATCAGCCCCAGAAATTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTGACCAAGCTTCTCAACGAGCTCAGCGCCAATCAGCGCGAGGACGCGGTCAACTCGCTAGCCTTCGAGGCCGAATTCCGCTTGCGCGACCCGGTCTACGGCTGCGTGGGCCTTATCTCCATCCTCCAACACAAGCTGAAGCAGATGCAAAACGACCTCTACAATGCCAAAAAGGAACTCGCTCATTACATTGGCCCACAAGCGCTTCTCCCCCCTCCCGTGCTCCCCTACGCCTCGTCTCAGCAGCAAATGCAGCTTCTGTTCGACGCCCAGATGGCCAGGGATCAGGACATGGTTAGAGCGTATGAGATGAAACAATCTCAACAACATCATTCGCATCTGCCATTCAATGGGTTTGATGCGGTGGTCGATGGCGACCGAGGGTTCGATCCAATGAACTCCGCCTCGGGTTTGACGTTGGGGACTTTTCTGGAGAATAACAATAACAGCTACCAAGCAGAACAATCTCATCATCCTAACCTGAATCTTCAGGTACAGTTCTTTCTTCAGCCTCAACAAACGCAAGTTCAACAACAAATCCACAAGCCAGAAGCCACTGCAGACGAGGGTAGGAATATTAACATTGGCCCATCTTGTTAA | 747 | 52.48 | MSSSSSNSPCAACKCLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELSANQREDAVNSLAFEAEFRLRDPVYGCVGLISILQHKLKQMQNDLYNAKKELAHYIGPQALLPPPVLPYASSQQQMQLLFDAQMARDQDMVRAYEMKQSQQHHSHLPFNGFDAVVDGDRGFDPMNSASGLTLGTFLENNNNSYQAEQSHHPNLNLQVQFFLQPQQTQVQQQIHKPEATADEGRNINIGPSC | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 743315 | 744606 | + | Sed0021614.1 | Sed01g0080 | 699384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0080 | 248 | Coils | Coil | 88 | 108 | - | - | |
Sed01g0080 | 248 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - | |
Sed01g0080 | 248 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Sed01g0080 | 248 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0080 | Sed-Chr1:743315 | Sed12g2463 | Sed-Chr12:34257423 | 1.30E-40 | dispersed | |
Sed03g2755 | Sed-Chr3:43982426 | Sed01g0080 | Sed-Chr1:743315 | 1.50E-48 | transposed | |
Sed01g0080 | Sed-Chr1:743315 | Sed05g3367 | Sed-Chr5:42875651 | 8.70E-74 | wgd | |
Sed01g0080 | Sed-Chr1:743315 | Sed05g3791 | Sed-Chr5:45612942 | 1.30E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37074 | PF03195 | LOB | 1.40E-40 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0080 | - | - | - | 0.0 |