Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0082 ATGGCGATCAAGAAAATCCTAGCTCATCGTCTCTTCAACGTATCTCAAATCTCAGCCCAATCCCTTTCCAAATGCCGGATTTCATCTTCTTCGCTTGGGGCTCGTGTTCCTCACAATACCAGTACTGCCAACATTCCTCACGATCCTGGAGATAACGCGAGTTTTCGCCGCTTTCTTCACAAGAGAGCGGCGGTTCCGGCGATGTCGCCGGAGCTTCGGGATTTGGCGGCCGGAGGGAAGTTGGTGGAGAAGTTCAAATCTCTAGGGATTGCGCCTGATCGTATCCGGCTCGATTGCCTTCGTCCACCAGCTTGCGATTCGACGGCATCCGATTTGACGGTTGAGGATGCGAGGAAGTTGCTCAGGGTAGCGCGGATGGAGATGGTGAAGTGGAAGTTGAGAGAGATTCAGAAATTATGGATTCCGCATTCGGAATTCGTTAGGGTTTGTGCTCAGGGATTTGATGATCCGAATCAGGGTCTTGAAATTGCTCGAATGCTTGATGAATCAGGGGCTGTGATTGTCTTAGGAAACGTGGTGTATCTCAAGCCTGAACAGGTAGCTAAAGTCATTGAAGGCCTCATTCCCTTACCAGCACCCATTCCAAATGATGCTATTAGGGAAGAGCTTGAAAAAATGGAGGTGCACAAAGCTGAAATCGACAAAAGAGCCGAAACGCTTGTACGACGGGAGCTCCGGTGTGGACTGGGCTTCTTCGTTGCTCAAACGGTTGCGTTCATGAGGCTTACCTTCTGGGAGCTCACATGGGATGTCATGGAGCCCATTTGCTTCTATGTCACCTCTGGTTACTTTATTGGTTGCTACGCTTTCTTCCTCAGAACCTCTAGGGAGCCTTGTTTCGAAGGCTTCTTCCGTAGCCGGTTTAACACGAAACAGAAGCACCTGATGAAGCTTCACAATTTCGATATCGCTCGTTACAACGAACTCCGAAGAGCTTGTTTTCTGAATTCCTCAGGTCAAGGAGTTCCTTCAGATTCTATGCAGTTGGAAAATCTCAGCGCCTTTAAAAATTTGCGCAAAACTTTTTAA 1050 48.48 MAIKKILAHRLFNVSQISAQSLSKCRISSSSLGARVPHNTSTANIPHDPGDNASFRRFLHKRAAVPAMSPELRDLAAGGKLVEKFKSLGIAPDRIRLDCLRPPACDSTASDLTVEDARKLLRVARMEMVKWKLREIQKLWIPHSEFVRVCAQGFDDPNQGLEIARMLDESGAVIVLGNVVYLKPEQVAKVIEGLIPLPAPIPNDAIREELEKMEVHKAEIDKRAETLVRRELRCGLGFFVAQTVAFMRLTFWELTWDVMEPICFYVTSGYFIGCYAFFLRTSREPCFEGFFRSRFNTKQKHLMKLHNFDIARYNELRRACFLNSSGQGVPSDSMQLENLSAFKNLRKTF 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 753586 756580 - Sed0015273.1 Sed01g0082 699386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0082 349 Pfam Mitochondrial calcium uniporter 159 316 IPR006769 -
Sed01g0082 349 Coils Coil 203 223 - -
Sed01g0082 349 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 75 322 IPR039055 GO:0005262(PANTHER)|GO:0015292(PANTHER)|GO:0031305(PANTHER)|GO:0036444(PANTHER)|GO:0051560(InterPro)|GO:0051560(PANTHER)|GO:1990246(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0082 K20858 - - csv:105434446 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0082 Sed-Chr1:753586 Sed13g1665 Sed-Chr13:21690975 1.10E-66 dispersed
Sed01g0082 Sed-Chr1:753586 Sed10g0429 Sed-Chr10:2693048 4.30E-71 wgd
Sed01g0082 Sed-Chr1:753586 Sed05g3371 Sed-Chr5:42921992 2.80E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g912 . . Bda04g00320 Bda10g00321 . . Bma09g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1347 . Lsi01g01053 . . . . . . . . Bpe06g00247 Bma03g01058 . Sed01g0082 . . . . . . . . Bhi10g02232 Tan07g1029 Cmetu11g0018 . Hepe10g0829 . . . . . . . . . . . Chy02g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005008 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40