Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0084 ATGCATTGTTCTAATCGTTTCTCTTCACTTCTGAGAAATTATGTGGTCATCCGTAAAAGAATTTATCAGGATGATTCCTTCAAATATTTGCATTCCTTTCGCCCATGTAAACAAGAGAAACCCATCAAATTGTTTAATAGAAATTTGAGGAAAGGAACTAAGGTAGTTAAAAAGGAAGAAGTAGATCCAAAGCTTTACACGAGAGATAGAGTGAGGGAGATATACAATCTTCTCAGAAATTGTTCATGGAGTTCTGCTCAACAACACCTAGAGAGACTCCCAATAAGATGGGATTCTTATCTCATCAACCAGGTTCTGAAGACTCATCCACCATTGGAAAAGGCATGGTTGTTCTTCAATTGGGCCTCTAGGCTGCAAATCGTCAAGCATGACCAGTATACGTATACGACGATGTTGGATATTTTTGGGGAAGCTGGGAGAATTTCATCCATGAATTTTGTATTTGAACAAATGAAAGAGAAGGGGATTAAGATAGATATAGTTACTTATACTTCATTGATGCACTGGCGGTCAAAGTCCGGGGATGTTGATGGGGCTATAATGGTTTGGAAGGAAATGAAAGGCAATGGCTGCTATCCGACCGTAGTTTCGTATACTGCTTACATAAAGATTTTGTTGGACAATGACCAAGTTACAGAGGCTACTGATGCATACAGGGAAATGCTTCAAACTGGGCTTTCTCCAAATTGTTGTACTTACACTGTCTTAATGGAATATCTTATTGGAGCAGGTAAATGCCAAGAAGCCCTTGATATTTTTCATAAAATGCAAGATGCTGAAGTATATCCTGATAAAGCAGCTTGCAATATACTGATTCAGAAATGTTGTAAATCTGGGGAGATAATGGTAATGACACAAATCCTTGAGTACATGAAGGAAAAATGCCTTGTGCTTCGATATGCCGTGTTTGTCGAAGCACATGAAACTTTAAAAAGTTGTTCTGTAAGTGATACCCTACTCAGGAAAGTTCATCCTCATATAAAAACCGAATCAATCAGTAAAGATGAGAAGGTTAGTACAAGGCCAAATATTATTCCTCTCAATGAAGATTATGAGCTCTTGGCAATTCTGTTGAAGGAGGATAAGCTTACTGCTATTGACCACATACTGATTGGGGCAATAGATAGTAACATACAGTTAGATTCTTCGATTCTTTCATCCATAATCGAGGTAAATTGCAAACGTAATCGTCCAAAAAGTGTACTTCTGGCATTCGACTATTGTTTAAAACACGGTGTAAACATTGAGAAAAATATGTATCTTGGCTTGATAGGGATTCTGATGCGATCAAGTTTATATTCAAAGTTACTGGACATTATTCAGGAAATGTATAGGCAAGGGCATTGTCTTGGACTCTATCATGCCACACTTATACTTCATGGGCTTGGCAAAGCTGGAAAACCGCAATATGCTAAGAAAGTTTTTAATATGTTGCCTGAAGAATTGAAGTGCACTCCAACTTACACTGCTCTGGTTGCTGCTTATTTCTCTACTGGAAGTTCTGGACTAGGGCTTAAAATTTATGAAACAATGCGCATGAGAGGATTTAAACCGTTTTTAGGCACGTATAATGTGCTGGTAAATGGTCTTGCAAAGAGCGGTAGAGTTGTTGAATTAGATCTTTTTAGAAAGGAGAAGAAGAGGTTTGAGATAAGTCATCATTCTCATCATAATACAGAACTGGAAGAAGAAAGGATTTGTGATCTTCTTTTTGGGGAATTGGTATCTTGA 1752 37.73 MHCSNRFSSLLRNYVVIRKRIYQDDSFKYLHSFRPCKQEKPIKLFNRNLRKGTKVVKKEEVDPKLYTRDRVREIYNLLRNCSWSSAQQHLERLPIRWDSYLINQVLKTHPPLEKAWLFFNWASRLQIVKHDQYTYTTMLDIFGEAGRISSMNFVFEQMKEKGIKIDIVTYTSLMHWRSKSGDVDGAIMVWKEMKGNGCYPTVVSYTAYIKILLDNDQVTEATDAYREMLQTGLSPNCCTYTVLMEYLIGAGKCQEALDIFHKMQDAEVYPDKAACNILIQKCCKSGEIMVMTQILEYMKEKCLVLRYAVFVEAHETLKSCSVSDTLLRKVHPHIKTESISKDEKVSTRPNIIPLNEDYELLAILLKEDKLTAIDHILIGAIDSNIQLDSSILSSIIEVNCKRNRPKSVLLAFDYCLKHGVNIEKNMYLGLIGILMRSSLYSKLLDIIQEMYRQGHCLGLYHATLILHGLGKAGKPQYAKKVFNMLPEELKCTPTYTALVAAYFSTGSSGLGLKIYETMRMRGFKPFLGTYNVLVNGLAKSGRVVELDLFRKEKKRFEISHHSHHNTELEEERICDLLFGELVS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 763561 766113 - Sed0022143.2 Sed01g0084 699388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0084 583 PANTHER OS03G0856100 PROTEIN 383 547 - -
Sed01g0084 583 NCBIfam pentatricopeptide repeat 168 202 IPR002885 -
Sed01g0084 583 NCBIfam pentatricopeptide repeat 494 525 IPR002885 -
Sed01g0084 583 NCBIfam pentatricopeptide repeat 203 237 IPR002885 -
Sed01g0084 583 NCBIfam pentatricopeptide repeat 133 166 IPR002885 -
Sed01g0084 583 NCBIfam pentatricopeptide repeat 238 271 IPR002885 -
Sed01g0084 583 Pfam Pentatricopeptide repeat domain 494 535 IPR002885 -
Sed01g0084 583 Pfam Pentatricopeptide repeat domain 154 212 IPR002885 -
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Sed01g0084 583 Pfam PPR repeat 463 487 IPR002885 -
Sed01g0084 583 Pfam PPR repeat family 238 284 IPR002885 -
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Sed01g0084 583 Gene3D Tetratricopeptide repeat domain 343 489 IPR011990 GO:0005515(InterPro)
Sed01g0084 583 Gene3D Tetratricopeptide repeat domain 59 222 IPR011990 GO:0005515(InterPro)
Sed01g0084 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Sed01g0084 583 Gene3D Tetratricopeptide repeat domain 490 559 IPR011990 GO:0005515(InterPro)
Sed01g0084 583 Gene3D Tetratricopeptide repeat domain 230 303 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0083 Sed-Chr1:761623 Sed01g0084 Sed-Chr1:763561 9.30E-260 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31