Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0100 ATGATGATGAAGAACATGAAAAGAAATTATGAGAATTTGATGCAAGACTATCACCACGCGGCGGCGGCTGCGGCGGCGGCAGGCTTCTTCACACCCTTCTCCAATGGCTTCGACAGATCCTCCGCCGTTGCCGCCGCCACCCACCAAGAAGCTCAACGTCAACACTACAACCACATAGCTCACCAGATCCGCAAGGAGAAGCTTCGCCTTCAAGGCTTCGATCCACCGCCTCCACCTCCACCGCCGTCGTCTTTGATCGGAATTGACGATGACGAAGATGCTGCCACTCTCCACCACGTCTATGAATCCACTGGAATTTTATCCGAAATGTTTAATTATCCACCCGCTCCACCACCGCCGCCACCAGCACCGCAAACTGAATGGTACGGTAACTCCGCAGACTCGGCGGTTGCCATGCAGTTTTTTCTTATGAATCCGAATCCTCGGTCGCCGTCGCCGCCAGCTCCGCCGCCCGCCTCCTCAACTCTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGACGAAACAAGAGATCATCACAATAATTCTTCTACAAACCCTAACGATGGCCGTTTATCGTTGTCATTATCTTCATCCTTAGAGGCTGCAAAAGCTGAGGAATTGAGGATGGATGACAGCGGGTTACTTTATCACCCTCACCCTCACCCGCAACAAATCCACGTCGGATCCATTGGGTCTTCAAATTCTTCATTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTCAAAGCTGCACAAGAATTATTGGAAGAGTTTTGTAGCGTTGGAAGAGGCCAGTTTAAGAAAAATAAATCGAATGTGAAATCAAATTTTCCCTCCAATTCCAACTCGCACGGCGGCGATGGCGGTGGAGTCTCTCCCTCGACATCGAAGGATCAACCGCCGCAACCTTTGTCTTCTGCCGATAGAATCGACCATCAAAGAAAGAAGGTCAAACTATTATCTATGCTTGATGAGGTGGATCGAAGGTACAACCATTACTGTGAGCAGATGCAAATGGTGGTCAATTCGTTCGACGTTGTGATGGGGTTCGGGGCAGCGGTGCCCTACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAGGATGCGATATCCGCGCAGCTGAAGCACAGCTGCGAGATGTTGGGGGAGAAAGATGGAGGAGCAGCTGGAAGAGGTTCAGGAATAACCAAAGGGGAGACTCCTCGGCTTAAGCTCTTGGAGCAAAGCTTAAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAGCAAGAAGCTTGGCGTCCTCAACGCGGCTTGCCCGAACGCTCTGTCAATATTTTGCGCGCTTGGCTCTTCGAGCATTTCCTTCACCCGTACCCTAGTGATGCTGATAAGCATTTGTTGTCTAGGCAGACTGGCTTATCAAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGAGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAATCCAAAGATGAAGAAGATGACGATAATTCCGATGAAGGCAGAGAAAAAACCAACCCCTTTTCTCAAACTCCGCCTCCTTCCTCCGCCGCATCTCCGCCGTCCTCCGCCGCCGCCGAAACCCAGGCGGCTGCGGCGCACTGCTTTCCGGGCACCCACTATGACTCAGAGCTGCAGGACACGTGTCGGCGTGTCGGCGTGCTCGCTGCACCTGATCAGCAATGCGGGACCACAGGCGGGCCTGCCACGTCTGACGTAGCGGGGCCCACCACAGTCATAAGGTACGGGACCACCGGGGGTGACGTGTCGCTCACACTAGGTTTACGCCACGCCGGAAATATCCCCGACAGCAAGGCCTCTTTCCCCCTCAGATCCGAGTTCGGAGGCTGTTAA 1929 52.51 MMMKNMKRNYENLMQDYHHAAAAAAAAGFFTPFSNGFDRSSAVAAATHQEAQRQHYNHIAHQIRKEKLRLQGFDPPPPPPPPSSLIGIDDDEDAATLHHVYESTGILSEMFNYPPAPPPPPPAPQTEWYGNSADSAVAMQFFLMNPNPRSPSPPAPPPASSTLHMLLPNPSSGGSFGQFTWGVDETRDHHNNSSTNPNDGRLSLSLSSSLEAAKAEELRMDDSGLLYHPHPHPQQIHVGSIGSSNSSLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNKSNVKSNFPSNSNSHGGDGGGVSPSTSKDQPPQPLSSADRIDHQRKKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCEMLGEKDGGAAGRGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQQESKDEEDDDNSDEGREKTNPFSQTPPPSSAASPPSSAAAETQAAAAHCFPGTHYDSELQDTCRRVGVLAAPDQQCGTTGGPATSDVAGPTTVIRYGTTGGDVSLTLGLRHAGNIPDSKASFPLRSEFGGC 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 923905 930995 + Sed0005045.1 Sed01g0100 699404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0100 642 MobiDBLite consensus disorder prediction 281 315 - -
Sed01g0100 642 Pfam Homeobox KN domain 461 500 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g0100 642 Gene3D - 447 509 - -
Sed01g0100 642 SMART prehox3 248 389 IPR006563 -
Sed01g0100 642 ProSiteProfiles 'Homeobox' domain profile. 441 504 IPR001356 GO:0003677(InterPro)
Sed01g0100 642 Coils Coil 3 23 - -
Sed01g0100 642 SMART HOX_1 444 508 IPR001356 GO:0003677(InterPro)
Sed01g0100 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 211 535 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g0100 642 FunFam BEL1-like homeodomain protein 4 447 509 - -
Sed01g0100 642 CDD homeodomain 444 505 IPR001356 GO:0003677(InterPro)
Sed01g0100 642 SUPERFAMILY Homeodomain-like 445 511 IPR009057 -
Sed01g0100 642 MobiDBLite consensus disorder prediction 281 323 - -
Sed01g0100 642 MobiDBLite consensus disorder prediction 510 554 - -
Sed01g0100 642 Pfam Associated with HOX 254 388 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0100 Sed-Chr1:923905 Sed01g3859 Sed-Chr1:67846577 4.20E-80 dispersed
Sed01g0101 Sed-Chr1:923905 Sed01g0100 Sed-Chr1:923905 0.00E+00 tandem
Sed05g3422 Sed-Chr5:43217900 Sed01g0100 Sed-Chr1:923905 2.30E-173 transposed
Sed01g0100 Sed-Chr1:923905 Sed10g0422 Sed-Chr10:2626412 1.10E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37081 PF07526 POX 1.10E-52 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0100 - - - 0.0