Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0101 ATGTCACAGCAAGACTATCACCACGCGGCGGCGGCTGCGGCGGCGGCAGGCTTCTTCACACCCTTCTCCAATGGCTTCGACAGATCCTCCGCCGTTGCCGCCGCCACCCACCAAGAAGCTCAACGTCAACACTACAACCACATAGCTCACCAGATCCGCAAGGAGAAGCTTCGCCTTCAAGGCTTCGATCCACCGCCTCCACCTCCACCGCCGTCGTCTTTGATCGGAATTGACGATGACGAAGATGCTGCCACTCTCCACCACGTCTATGAATCCACTGGAATTTTATCCGAAATGTTTAATTATCCACCCGCTCCACCACCGCCGCCACCAGCACCGCAAACTGAATGGTACGGTAACTCCGCAGACTCGGCGGTTGCCATGCAGTTTTTTCTTATGAATCCGAATCCTCGGTCGCCGTCGCCGCCAGCTCCGCCGCCCGCCTCCTCAACTCTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGACGAAACAAGAGATCATCACAATAATTCTTCTACAAACCCTAACGATGGCCGTTTATCGTTGTCATTATCTTCATCCTTAGAGGCTGCAAAAGCTGAGGAATTGAGGATGGATGACAGCGGGTTACTTTATCACCCTCACCCTCACCCGCAACAAATCCACGTCGGATCCATTGGGTCTTCAAATTCTTCATTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTCAAAGCTGCACAAGAATTATTGGAAGAGTTTTGTAGCGTTGGAAGAGGCCAGTTTAAGAAAAATAAATCGAATGTGAAATCAAATTTTCCCTCCAATTCCAACTCGCACGGCGGCGATGGCGGTGGAGTCTCTCCCTCGACATCGAAGGATCAACCGCCGCAACCTTTGTCTTCTGCCGATAGAATCGACCATCAAAGAAAGAAGGTCAAACTATTATCTATGCTTGATGAGGTGGATCGAAGGTACAACCATTACTGTGAGCAGATGCAAATGGTGGTCAATTCGTTCGACGTTGTGATGGGGTTCGGGGCAGCGGTGCCCTACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAGGATGCGATATCCGCGCAGCTGAAGCACAGCTGCGAGATGTTGGGGGAGAAAGATGGAGGAGCAGCTGGAAGAGGTTCAGGAATAACCAAAGGGGAGACTCCTCGGCTTAAGCTCTTGGAGCAAAGCTTAAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAGCAAGAAGCTTGGCGTCCTCAACGCGGCTTGCCCGAACGCTCTGTCAATATTTTGCGCGCTTGGCTCTTCGAGCATTTCCTTCACCCGTACCCTAGTGATGCTGATAAGCATTTGTTGTCTAGGCAGACTGGCTTATCAAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGAGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAATCCAAAGATGAAGAAGATGACGATAATTCCGATGAAGGCAGAGAAAAAACCAACCCCTTTTCTCAAACTCCGCCTCCTTCCTCCGCCGCATCTCCGCCGTCCTCCGCCGCCGCCGAAACCCAGGCGGCTGCGGCGCACTGCTTTCCGGGCACCCACTATGACTCAGAGCTGCAGGACACGTGTCGGCGTGTCGGCGTGCTCGCTGCACCTGATCAGCAATGCGGGACCACAGGCGGGCCTGCCACGTCTGACGTAGCGGGGCCCACCACAGTCATAAGGTACGGGACCACCGGGGGTGACGTGTCGCTCACACTAGGTTTACGCCACGCCGGAAATATCCCCGACAGCAAGGCCTCTTTCCCCCTCAGATCCGAGTTCGGAGGCTGTTAA 1896 53.06 MSQQDYHHAAAAAAAAGFFTPFSNGFDRSSAVAAATHQEAQRQHYNHIAHQIRKEKLRLQGFDPPPPPPPPSSLIGIDDDEDAATLHHVYESTGILSEMFNYPPAPPPPPPAPQTEWYGNSADSAVAMQFFLMNPNPRSPSPPAPPPASSTLHMLLPNPSSGGSFGQFTWGVDETRDHHNNSSTNPNDGRLSLSLSSSLEAAKAEELRMDDSGLLYHPHPHPQQIHVGSIGSSNSSLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNKSNVKSNFPSNSNSHGGDGGGVSPSTSKDQPPQPLSSADRIDHQRKKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCEMLGEKDGGAAGRGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQQESKDEEDDDNSDEGREKTNPFSQTPPPSSAASPPSSAAAETQAAAAHCFPGTHYDSELQDTCRRVGVLAAPDQQCGTTGGPATSDVAGPTTVIRYGTTGGDVSLTLGLRHAGNIPDSKASFPLRSEFGGC 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 923905 930995 + Sed0005045.2 Sed01g0101 699405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0101 631 MobiDBLite consensus disorder prediction 270 312 - -
Sed01g0101 631 Gene3D - 436 498 - -
Sed01g0101 631 Pfam Homeobox KN domain 450 489 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g0101 631 ProSiteProfiles 'Homeobox' domain profile. 430 493 IPR001356 GO:0003677(InterPro)
Sed01g0101 631 MobiDBLite consensus disorder prediction 499 545 - -
Sed01g0101 631 MobiDBLite consensus disorder prediction 270 304 - -
Sed01g0101 631 Pfam Associated with HOX 243 377 IPR006563 -
Sed01g0101 631 SMART prehox3 237 378 IPR006563 -
Sed01g0101 631 FunFam BEL1-like homeodomain protein 4 436 498 - -
Sed01g0101 631 SUPERFAMILY Homeodomain-like 434 500 IPR009057 -
Sed01g0101 631 CDD homeodomain 433 494 IPR001356 GO:0003677(InterPro)
Sed01g0101 631 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 200 526 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g0101 631 SMART HOX_1 433 497 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0101 Sed-Chr1:923905 Sed05g3422 Sed-Chr5:43217900 1.80E-176 dispersed
Sed01g0101 Sed-Chr1:923905 Sed01g0100 Sed-Chr1:923905 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37082 PF07526 POX 1.00E-52 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0101 - - - 0.0