Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0119 ATGGAGCTTTCTGCATCAACCCACATCCTAAGTTCTCCTACTTTTCCGGTGCTACTGAAGCCCAAGGTTGGGATTAGGGTTCCTCAAGTTTCTTTCTCATCATTCCATCTTCGCCGCTCTGTTTCATCTCTTAAACTCGATGGTAGAATGGGATTTAATAGGAAAATACATTGTGCTTGTTCATCGGAAGGAAACGGATCATCGATAGTCACTTCTTCAAGTGGTGTTACAGGGCCTCGAGTTGCCGAAGTAAAAAGGGTTACTAAGGAAACAAATGTATCGGTCAAGATAAACCTAGATGGCTCTGGGATTGCAGATAGTAGTACTGGGATTCCATTTCTTGATCATATGTTAGATCAACTTGCTTCACATGGGGTTTTCGATGTGCATGTAAGGGCGACGGGAGATATCCACATTGATGATCACCACACAAATGAAGATGTTGCCCTTGCAATTGGATCGGCTTTGCTGAATGCATTAGGTGATCGGAAAGGAATTTACCGATTTGGAGACTTCTCAGCTCCTCTTGATGAAGCACTGATACATGTTTCACTAGATTTATCTGGCCGGCCATATTTGGGTTATAATCTCGAGATACCTACTCAGAGAGTTGGAACATATGACACCCAGTTGGTGGAGCATTTCTTCCAGTCTCTAGTTAATACTTCTGGTATGACTCTTCACATTCGACAGCTTGCCGGACAGAATTCACATCATATTATTGAAGCCACTTTCAAAGCATTTGCTAGGGCCCTTAGACAAGCAACAGAGTATGACCCACGCCGTCTTGACACCGTTCCTAGTTCGAAAGGCGTTCTAACACGTACTTGA 831 43.56 MELSASTHILSSPTFPVLLKPKVGIRVPQVSFSSFHLRRSVSSLKLDGRMGFNRKIHCACSSEGNGSSIVTSSSGVTGPRVAEVKRVTKETNVSVKINLDGSGIADSSTGIPFLDHMLDQLASHGVFDVHVRATGDIHIDDHHTNEDVALAIGSALLNALGDRKGIYRFGDFSAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGQNSHHIIEATFKAFARALRQATEYDPRRLDTVPSSKGVLTRT 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1070621 1074998 - Sed0017770.5 Sed01g0119 699423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0119 276 SUPERFAMILY Ribosomal protein S5 domain 2-like 165 257 IPR020568 -
Sed01g0119 276 CDD IGPD 82 273 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
Sed01g0119 276 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 168 276 IPR038494 -
Sed01g0119 276 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 2. 234 246 IPR020565 GO:0000105(InterPro)|GO:0004424(InterPro)
Sed01g0119 276 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 61 273 IPR000807 GO:0000105(PANTHER)|GO:0000105(InterPro)|GO:0004424(InterPro)|GO:0004424(PANTHER)
Sed01g0119 276 SUPERFAMILY Ribosomal protein S5 domain 2-like 80 164 IPR020568 -
Sed01g0119 276 Hamap Imidazoleglycerol-phosphate dehydratase [hisB]. 80 273 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
Sed01g0119 276 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 1. 139 152 IPR020565 GO:0000105(InterPro)|GO:0004424(InterPro)
Sed01g0119 276 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 67 167 IPR038494 -
Sed01g0119 276 FunFam Imidazoleglycerol-phosphate dehydratase HisB 71 167 - -
Sed01g0119 276 FunFam Imidazoleglycerol-phosphate dehydratase 168 273 - -
Sed01g0119 276 Pfam Imidazoleglycerol-phosphate dehydratase 109 252 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0119 K01693 - - csv:101211659 424.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0117 Sed-Chr1:1070621 Sed01g0119 Sed-Chr1:1070621 1.10E-154 dispersed
Sed01g0119 Sed-Chr1:1070621 Sed10g1629 Sed-Chr10:32884790 4.70E-113 dispersed
Sed01g0118 Sed-Chr1:1070621 Sed01g0119 Sed-Chr1:1070621 1.10E-154 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g497 Blo01g00125 Blo12g00330 Bda03g00887 Bda08g00236 Bpe04g00831 . Bma04g00784 Bma05g01109 . Cmo17g00222 . . . . . . . . . . . . . . Cla06g00584 Cam06g0622 Cec06g0624 Cco06g0630 Clacu06g0609 Cmu06g0602 Cre06g1370 . . . . . . . . . . . . Bpe05g00902 . . . Sed01g0119 . . . Cma17g00235 . Car17g00214 Cpe12g00198 . Bhi12g01709 Tan06g2522 Cmetu01g0197 . Hepe03g0199 . Lcy13g0283 . . . . . . . Lsi09g01320 . . Cme01g01564