Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0126 ATGAAAATGAGGCAGCTTACTTTTTTGGTGTTTGCCAACATAGTTGGTCTCCTAGGCTTGATAGGCTACACTCAAGCTCAATTGCAGCTTGGTTTCTACGCCAAAAGCTGCCCGAATGCTGAAAAGATTGTGCTTGATTTCGTTCACGAGCACATCCCCAATGCCCCTTCATTGGCAGCAACTTTCATCAGAATGCACTTCCATGATTGCTTCGTCAGGGGTTGTGATGCATCTGTTCTTATTAACACCACCTCAAATAGCCAAGCTGAGAAGGATGCTCCACCAAATCGAACACTCAGAGGCTTCGACTTCCTTGATAGAGTTAAAAGCTTACTTGAAGCTGAATGCCCGGGAGTTGTTTCTTGCGCAGATGTTCTTTCCTTGGTTACAAGAGATAGCATTGTAGCCACAGGAGGTCCTTACTGGGAAGTACCAACAGGACGAAGAGATGGAGTGATTTCAAGGGCATCAGAAGCCTCCAGTAACATCCCCGGTCCATCTTCAAACTTCTCAACACTCCAAACCCTTTTCGGAAACCAAGGCCTTAATGTTAAGGACTTGGTATTACTTTCTGGGGCACACACAATCGGCATAGCTCATTGCGCGTCATTCCGAAACCGACTGTTCAACTTCAGCGGCGTCGGCGACCAGGACCCATCTCTGGACCCCAACTACGCAGCTAATCTGAAAGCCAAAAAATGCAAAACCCCGACCGACAACACCAAAGTCGAAATGGACCCTGGAAGCAGAAACACTTTCGATCTTAGCTACTTTTCTCTTCTTCTAAAACGAAGGGGCCTTTTCCAATCCGATTCCGCGCTCACTAAAGACGCAGCCTCACTGGCTCTGGTTCAGAAGCTCGTTCAAGGACCCCTTCAAGAATTCTTCGCTGAATTTGCAGCTGCCATGGAGAAAATGGGTCGGATCAATGTGAAGACTGGAACTGAAGGGGAAATCAGAAAGCGATGCGCGGTTGTGAATAGTTGA 987 47.42 MKMRQLTFLVFANIVGLLGLIGYTQAQLQLGFYAKSCPNAEKIVLDFVHEHIPNAPSLAATFIRMHFHDCFVRGCDASVLINTTSNSQAEKDAPPNRTLRGFDFLDRVKSLLEAECPGVVSCADVLSLVTRDSIVATGGPYWEVPTGRRDGVISRASEASSNIPGPSSNFSTLQTLFGNQGLNVKDLVLLSGAHTIGIAHCASFRNRLFNFSGVGDQDPSLDPNYAANLKAKKCKTPTDNTKVEMDPGSRNTFDLSYFSLLLKRRGLFQSDSALTKDAASLALVQKLVQGPLQEFFAEFAAAMEKMGRINVKTGTEGEIRKRCAVVNS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1117013 1120541 + Sed0024532.2 Sed01g0126 699430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0126 328 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g0126 328 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed01g0126 328 PANTHER PEROXIDASE 25-RELATED 24 323 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Sed01g0126 328 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 Gene3D - 32 327 - -
Sed01g0126 328 Gene3D Peroxidase, domain 2 164 306 - -
Sed01g0126 328 FunFam Peroxidase 164 306 - -
Sed01g0126 328 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 Pfam Peroxidase 46 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0126 328 FunFam Peroxidase 31 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0126 Sed-Chr1:1117013 Sed05g3076 Sed-Chr5:41042886 9.20E-148 dispersed
Sed01g0125 Sed-Chr1:1117013 Sed01g0126 Sed-Chr1:1117013 1.40E-188 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0126 K00430 - csv:101213629 550.821