Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0153 | ATGGAGGATCAGCGAGATGATGTTGCACCATCAGATCAAGGGCCGTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTGGAGACATTTGGATCTGTTTCTTTGGGTCCTCGTGAAGATATTGTAAGTGAAAAGGAAGAGGTCATCAATTTTGATCAAGATGTGTTGTCGCCTAAAAGAGCTTCCCAAATCCTCTGGCACACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCTGAAGGTTATAGAAACGATGTTATTCTTGTGGAGATGCAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTCATCCTGACACTGGTTAAGGGATTAAATTCAAATCAAGCTGCAATTATCAAGAAGATCGCTGGACTGGTTTCTGATTTTTATAAACGGCCAGTTTTAGAAAGTCCTGCAAAAACTTCAGTAGAAGAAACCTCCTACTCATTCGAGGATAGAAGCATTCAACTACTCGGACAAATAAAATTTGGTTCATGCCATCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCAGTCTCAGAGTGGGCTTGCCGAATGAGGGGGCTGTTGGGTGTGTGGACTCATACAAGCATATGTCTGTGATAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTAATGCGATATCCTGGCCAGTTGATACCATGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGGGAAAGCGATTCTGCGGAAAACGATTCATGTGATTCACCTTTAGAACCTAATAGTCCTCTTTATGGATTCTCGGACAGAACCGATCCTGATAGTGTTGAAAAAGATGAGAGCCTTCAATTCCACAAAAAGTTTGAAGTAGCTTCAAATGCATATGGTCCTTCATTGTGCAACTTAATGTTGCGATCGAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGACATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGCGGCCGGTCCATTCTTAGTGGGGACAGGAAAGCCTTTCGAGATTTTTCTGACGATGTCTCCACTTCAAGATCAGATGGTGCTCCAACTCCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCGGAGATTGGTGATGATATAGTGAGGGCTGTGCGAGCAATGAATGAAACATTGAAGCAAAATCGTCCTTCGAGAGGACAAGGAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCAGAGAAATGATCCAGTAGGTTCTCAAAGAGCAATATCATTACCATCATCACCACATGAGTATAGGGGTCAAACCTCTAAGATAAATGAGCATTTAGCATATGTGAACGATGATTTAGCCTCAAAATGGACTCAAGTTCTTGAATCTTTCTCCTTGAACGACAAACCACTATTACCTTATCCAGAATGGAACATTGAATACTCAGAACTGACGGTTGGAATCCGTATTGGAATTGGGTTTTTTGGTGAAGTTTTTCGTGGCATTTGGAATGGAACCGATGTGGCAATCAAAGTTTTCCTAGAGCAGGATCTAACTTCTGAAAACATTGAAGACTTTTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTTGGTGCATGCACAAAGCCCCCACGCTTATCAATGATCACTGAATACATGGAAATGGGCTCCTTGTATTCTTTGATCCATTTGAGTGGTCAGAAAAAAAGACTTAGCTGGCGGAAGAGACTAAAGATGTTGCGTGACATTTGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAACATTGGACAGTCAAGATATGCGATTTTGGACTTTCAAGAATATTGACTGAGACTCCAGCAAAAGGATCTCCATCTGCTGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACCGAAAAGTGTGATATTTTTAGCTTGGGGGTCATTATGTGGGAGTTCTGCACGCTAAGTAGACCGTGGGAGGGCGTTCCACCAGAGCGGGTAGTTTATACTGTTGGCACGGAGGGATCACGCCTAGAGATTCCTGAAGGCCCACTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAGGCTGCGAAGAGATTCTCTCGCGCTTGCTCGACTGCGAGTACTCACTTTCTTGA | 2388 | 43.26 | MEDQRDDVAPSDQGPSNASWWSSDFVETFGSVSLGPREDIVSEKEEVINFDQDVLSPKRASQILWHTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEMQKDKKLSMLKQLILTLVKGLNSNQAAIIKKIAGLVSDFYKRPVLESPAKTSVEETSYSFEDRSIQLLGQIKFGSCHPRAILFKALADTVGLESSLRVGLPNEGAVGCVDSYKHMSVIVVLNSVELVVDLMRYPGQLIPWSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSDRTDPDSVEKDESLQFHKKFEVASNAYGPSLCNLMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSILSGDRKAFRDFSDDVSTSRSDGAPTPEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRPSRGQGDDRSFSHPSNERNNSSDVQRNDPVGSQRAISLPSSPHEYRGQTSKINEHLAYVNDDLASKWTQVLESFSLNDKPLLPYPEWNIEYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTSENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKRLSWRKRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTETPAKGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWEFCTLSRPWEGVPPERVVYTVGTEGSRLEIPEGPLGRLISDCWAEPNERPGCEEILSRLLDCEYSLS | 795 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1289395 | 1300549 | - | Sed0023503.1 | Sed01g0153 | 699457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0153 | 795 | Gene3D | Phosphorylase Kinase; domain 1 | 532 | 617 | - | - | |
Sed01g0153 | 795 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 345 | 787 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed01g0153 | 795 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 58 | 254 | - | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 273 | 302 | - | - | |
Sed01g0153 | 795 | SMART | serkin_6 | 539 | 788 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0153 | 795 | Gene3D | Transferase(Phosphotransferase) domain 1 | 618 | 794 | - | - | |
Sed01g0153 | 795 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 658 | 670 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0153 | 795 | ProSiteProfiles | Protein kinase domain profile. | 539 | 794 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0153 | 795 | CDD | STKc_MAP3K-like | 545 | 787 | - | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 440 | 492 | - | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 363 | 383 | - | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 395 | 420 | - | - | |
Sed01g0153 | 795 | FunFam | Serine/threonine-protein kinase isoform 1 | 530 | 617 | - | - | |
Sed01g0153 | 795 | SUPERFAMILY | Protein kinase-like (PK-like) | 515 | 787 | IPR011009 | - | |
Sed01g0153 | 795 | MobiDBLite | consensus disorder prediction | 460 | 492 | - | - | |
Sed01g0153 | 795 | Pfam | Protein tyrosine and serine/threonine kinase | 541 | 787 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0153 | 795 | ProSitePatterns | Protein kinases ATP-binding region signature. | 545 | 566 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0153 | Sed-Chr1:1289395 | Sed01g0155 | Sed-Chr1:1289395 | 0.00E+00 | dispersed | |
Sed01g0153 | Sed-Chr1:1289395 | Sed01g0154 | Sed-Chr1:1289395 | 0.00E+00 | tandem | |
Sed01g0153 | Sed-Chr1:1289395 | Sed05g3193 | Sed-Chr5:41737629 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78537 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-58 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0153 | - | - | - | 0.0 |