Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0153 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGATCAAGGGCCGTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTGGAGACATTTGGATCTGTTTCTTTGGGTCCTCGTGAAGATATTGTAAGTGAAAAGGAAGAGGTCATCAATTTTGATCAAGATGTGTTGTCGCCTAAAAGAGCTTCCCAAATCCTCTGGCACACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCTGAAGGTTATAGAAACGATGTTATTCTTGTGGAGATGCAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTCATCCTGACACTGGTTAAGGGATTAAATTCAAATCAAGCTGCAATTATCAAGAAGATCGCTGGACTGGTTTCTGATTTTTATAAACGGCCAGTTTTAGAAAGTCCTGCAAAAACTTCAGTAGAAGAAACCTCCTACTCATTCGAGGATAGAAGCATTCAACTACTCGGACAAATAAAATTTGGTTCATGCCATCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCAGTCTCAGAGTGGGCTTGCCGAATGAGGGGGCTGTTGGGTGTGTGGACTCATACAAGCATATGTCTGTGATAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTAATGCGATATCCTGGCCAGTTGATACCATGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGGGAAAGCGATTCTGCGGAAAACGATTCATGTGATTCACCTTTAGAACCTAATAGTCCTCTTTATGGATTCTCGGACAGAACCGATCCTGATAGTGTTGAAAAAGATGAGAGCCTTCAATTCCACAAAAAGTTTGAAGTAGCTTCAAATGCATATGGTCCTTCATTGTGCAACTTAATGTTGCGATCGAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGACATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGCGGCCGGTCCATTCTTAGTGGGGACAGGAAAGCCTTTCGAGATTTTTCTGACGATGTCTCCACTTCAAGATCAGATGGTGCTCCAACTCCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCGGAGATTGGTGATGATATAGTGAGGGCTGTGCGAGCAATGAATGAAACATTGAAGCAAAATCGTCCTTCGAGAGGACAAGGAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCAGAGAAATGATCCAGTAGGTTCTCAAAGAGCAATATCATTACCATCATCACCACATGAGTATAGGGGTCAAACCTCTAAGATAAATGAGCATTTAGCATATGTGAACGATGATTTAGCCTCAAAATGGACTCAAGTTCTTGAATCTTTCTCCTTGAACGACAAACCACTATTACCTTATCCAGAATGGAACATTGAATACTCAGAACTGACGGTTGGAATCCGTATTGGAATTGGGTTTTTTGGTGAAGTTTTTCGTGGCATTTGGAATGGAACCGATGTGGCAATCAAAGTTTTCCTAGAGCAGGATCTAACTTCTGAAAACATTGAAGACTTTTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTTGGTGCATGCACAAAGCCCCCACGCTTATCAATGATCACTGAATACATGGAAATGGGCTCCTTGTATTCTTTGATCCATTTGAGTGGTCAGAAAAAAAGACTTAGCTGGCGGAAGAGACTAAAGATGTTGCGTGACATTTGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAACATTGGACAGTCAAGATATGCGATTTTGGACTTTCAAGAATATTGACTGAGACTCCAGCAAAAGGATCTCCATCTGCTGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACCGAAAAGTGTGATATTTTTAGCTTGGGGGTCATTATGTGGGAGTTCTGCACGCTAAGTAGACCGTGGGAGGGCGTTCCACCAGAGCGGGTAGTTTATACTGTTGGCACGGAGGGATCACGCCTAGAGATTCCTGAAGGCCCACTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAGGCTGCGAAGAGATTCTCTCGCGCTTGCTCGACTGCGAGTACTCACTTTCTTGA 2388 43.26 MEDQRDDVAPSDQGPSNASWWSSDFVETFGSVSLGPREDIVSEKEEVINFDQDVLSPKRASQILWHTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEMQKDKKLSMLKQLILTLVKGLNSNQAAIIKKIAGLVSDFYKRPVLESPAKTSVEETSYSFEDRSIQLLGQIKFGSCHPRAILFKALADTVGLESSLRVGLPNEGAVGCVDSYKHMSVIVVLNSVELVVDLMRYPGQLIPWSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSDRTDPDSVEKDESLQFHKKFEVASNAYGPSLCNLMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSILSGDRKAFRDFSDDVSTSRSDGAPTPEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRPSRGQGDDRSFSHPSNERNNSSDVQRNDPVGSQRAISLPSSPHEYRGQTSKINEHLAYVNDDLASKWTQVLESFSLNDKPLLPYPEWNIEYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTSENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKRLSWRKRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTETPAKGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWEFCTLSRPWEGVPPERVVYTVGTEGSRLEIPEGPLGRLISDCWAEPNERPGCEEILSRLLDCEYSLS 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1289395 1300549 - Sed0023503.1 Sed01g0153 699457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0153 795 Gene3D Phosphorylase Kinase; domain 1 532 617 - -
Sed01g0153 795 PANTHER SERINE-THREONINE PROTEIN KINASE 345 787 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g0153 795 Pfam Ethylene-responsive protein kinase Le-CTR1 58 254 - -
Sed01g0153 795 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g0153 795 MobiDBLite consensus disorder prediction 273 302 - -
Sed01g0153 795 SMART serkin_6 539 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0153 795 Gene3D Transferase(Phosphotransferase) domain 1 618 794 - -
Sed01g0153 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0153 795 ProSiteProfiles Protein kinase domain profile. 539 794 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0153 795 CDD STKc_MAP3K-like 545 787 - -
Sed01g0153 795 MobiDBLite consensus disorder prediction 440 492 - -
Sed01g0153 795 MobiDBLite consensus disorder prediction 363 383 - -
Sed01g0153 795 MobiDBLite consensus disorder prediction 395 420 - -
Sed01g0153 795 FunFam Serine/threonine-protein kinase isoform 1 530 617 - -
Sed01g0153 795 SUPERFAMILY Protein kinase-like (PK-like) 515 787 IPR011009 -
Sed01g0153 795 MobiDBLite consensus disorder prediction 460 492 - -
Sed01g0153 795 Pfam Protein tyrosine and serine/threonine kinase 541 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0153 795 ProSitePatterns Protein kinases ATP-binding region signature. 545 566 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0153 Sed-Chr1:1289395 Sed01g0155 Sed-Chr1:1289395 0.00E+00 dispersed
Sed01g0153 Sed-Chr1:1289395 Sed01g0154 Sed-Chr1:1289395 0.00E+00 tandem
Sed01g0153 Sed-Chr1:1289395 Sed05g3193 Sed-Chr5:41737629 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78537 PF07714 PK_Tyr_Ser-Thr 1.30E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0153 - - - 0.0