Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0156 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGATCAAGGGCCGTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTGGAGACATTTGGATCTGTTTCTTTGGGTCCTCGTGAAGATATTGTAAGTGAAAAGGAAGAGGTCATCAATTTTGATCAAGATGTGTTGTCGCCTAAAAGAGCTTCCCAAATCCTCTGGCACACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCTGAAGGTTATAGAAACGATGTTATTCTTGTGGAGATGCAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTCATCCTGACACTGGTTAAGGGATTAAATTCAAATCAAGCTGCAATTATCAAGAAGATCGCTGGACTGGTTTCTGATTTTTATAAACGGCCAGTTTTAGAAAGTCCTGCAAAAACTTCAGTAGAAGAAACCTCCTACTCATTCGAGGATAGAAGCATTCAACTACTCGGACAAATAAAATTTGGTTCATGCCATCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCAGTCTCAGAGTGGGCTTGCCGAATGAGGGGGCTGTTGGGTGTGTGGACTCATACAAGCATATGTCTGTGATAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTAATGCGATATCCTGGCCAGTTGATACCATGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGGGAAAGCGATTCTGCGGAAAACGATTCATGTGATTCACCTTTAGAACCTAATAGTCCTCTTTATGGATTCTCGGACAGAACCGATCCTGATAGTGTTGAAAAAGATGAGAGCCTTCAATTCCACAAAAAGTTTGAAGTAGCTTCAAATGCATATGGTCCTTCATTGTGCAACTTAATGTTGCGATCGAGTACAACACTTGACAGGAAACTGAGTCGGAGAAAGGACATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGCGGCCGGTCCATTCTTAGTGGGGACAGGAAAGCCTTTCGAGATTTTTCTGACGATGTCTCCACTTCAAGATCAGATGGTGCTCCAACTCCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCGGAGATTGGTGATGATATAGTGAGGGCTGTGCGAGCAATGAATGAAACATTGAAGCAAAATCGTCCTTCGAGAGGACAAGGAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCAGAGAAATGATCCAGTAGGTTCTCAAAGAGCAATATCATTACCATCATCACCACATGAGTATAGGGGTCAAACCTCTAAGATAAATGAGCATTTAGCATATGTGAACGATGATTTAGCCTCAAAATGGACTCAAGTTCTTGAATCTTTCTCCTTGAACGACAAACCACTATTACCTTATCCAGAATGGAACATTGAATACTCAGAACTGACGGTTGGAATCCGTATTGGAATTGGGTTTTTTGGTGAAGTTTTTCGTGGCATTTGGAATGGAACCGATGTGGCAATCAAAGTTTTCCTAGAGCAGGATCTAACTTCTGAAAACATTGAAGACTTTTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTTGGTGCATGCACAAAGCCCCCACGCTTATCAATGATCACTGAATACATGGAAATGGGCTCCTTGTATTCTTTGATCCATTTGAGTGGTCAGAAAAAAAGACTTAGCTGGCGGAAGAGACTAAAGATGTTGCGTGACATTTGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAACATTGGACAGTCAAGATATGCGATTTTGGACTTTCAAGAATATTGACTGAGACTCCAGCAAAAGGATCTCCATCTGCTGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACCGAAAAGTGTGATATTTTTAGCTTGGGGGTCATTATGTGGGAGTTCTGCACGCTAAGTAGACCGTGGGAGGGCGTTCCACCAGAGCGGGTAGTTTATACTGTTGGCACGGAGGGATCACGCCTAGAGATTCCTGAAGGCCCACTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAGGCTGCGAAGAGATTCTCTCGCGCTTGCTCGACTGCGAGTACTCACTTTCTTGA 2340 43.38 MEDQRDDVAPSDQGPSNASWWSSDFVETFGSVSLGPREDIVSEKEEVINFDQDVLSPKRASQILWHTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEMQKDKKLSMLKQLILTLVKGLNSNQAAIIKKIAGLVSDFYKRPVLESPAKTSVEETSYSFEDRSIQLLGQIKFGSCHPRAILFKALADTVGLESSLRVGLPNEGAVGCVDSYKHMSVIVVLNSVELVVDLMRYPGQLIPWSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSDRTDPDSVEKDESLQFHKKFEVASNAYGPSLCNLMLRSSTTLDRKLSRRKDIAEQRTASSSPEHPSFRARGRSILSGDRKAFRDFSDDVSTSRSDGAPTPEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRPSRGQGDDRSFSHPSNERNNSSDVQRNDPVGSQRAISLPSSPHEYRGQTSKINEHLAYVNDDLASKWTQVLESFSLNDKPLLPYPEWNIEYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTSENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKRLSWRKRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTETPAKGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWEFCTLSRPWEGVPPERVVYTVGTEGSRLEIPEGPLGRLISDCWAEPNERPGCEEILSRLLDCEYSLS 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1289395 1300549 - Sed0023503.4 Sed01g0156 699460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0156 779 SUPERFAMILY Protein kinase-like (PK-like) 499 771 IPR011009 -
Sed01g0156 779 ProSitePatterns Protein kinases ATP-binding region signature. 529 550 IPR017441 GO:0005524(InterPro)
Sed01g0156 779 Pfam Protein tyrosine and serine/threonine kinase 525 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0156 779 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g0156 779 FunFam Serine/threonine-protein kinase isoform 1 514 601 - -
Sed01g0156 779 MobiDBLite consensus disorder prediction 339 404 - -
Sed01g0156 779 PANTHER SERINE-THREONINE PROTEIN KINASE 347 771 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g0156 779 CDD STKc_MAP3K-like 529 771 - -
Sed01g0156 779 SMART serkin_6 523 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0156 779 Gene3D Transferase(Phosphotransferase) domain 1 602 778 - -
Sed01g0156 779 MobiDBLite consensus disorder prediction 424 476 - -
Sed01g0156 779 Gene3D Phosphorylase Kinase; domain 1 516 601 - -
Sed01g0156 779 ProSiteProfiles Protein kinase domain profile. 523 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0156 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0156 779 Pfam Ethylene-responsive protein kinase Le-CTR1 58 254 - -
Sed01g0156 779 MobiDBLite consensus disorder prediction 367 384 - -
Sed01g0156 779 MobiDBLite consensus disorder prediction 444 476 - -
Sed01g0156 779 MobiDBLite consensus disorder prediction 272 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0154 Sed-Chr1:1289395 Sed01g0156 Sed-Chr1:1289395 0.00E+00 dispersed
Sed01g0156 Sed-Chr1:1289395 Sed05g3193 Sed-Chr5:41737629 0.00E+00 dispersed
Sed01g0155 Sed-Chr1:1289395 Sed01g0156 Sed-Chr1:1289395 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78540 PF07714 PK_Tyr_Ser-Thr 1.30E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0156 - - - 0.0