Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0174 ATGGGTTGCCATTATTCGAAGCTATCTGTTGAAGAAGAGGATATGCGATTGAATTCTCTGAAACGAGCTGAAGGTGTTCGACAAAATGCCTCAATGAGAGCAGATAGGGTGAAAACAGATGGAAGTGTCTTCAAAGTTGCATATTATGATAAGAAAGCCAATGGGTCAAACAGGGTATATGATGATCAAATTGAGAGAAAGAAGAGGGAGAGATTGGAAGCAGCCATTTCTGCTAATTATCCTGGAAAATGGAGTATTCCAAAGGCTGTGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCGAGCTGGCTCTCGTCTGTGGCTGGGGAAGCGCTCGAGGGATGGCTGCCTCGAAAAGCCGAAACATTCGAGAAACTAGACAAGATAGGACAAGGGACATATAGTAGTGTTTACAAGGCTCGTGATATCATTAACGGTAAACTAGTCGCTCTTAAACGAGTTCGATTCGACAATCTTGATGCAGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGGCTGGATCATCCAAATGTTATCAAATTGGAAAGCTTGATTACGTCTCCGCGTTCATGTAGCTTGTACCTCGTCTTTGAGTACATGGAGCATGATCTTACTGGGCTTGCATCTCGGCCTGGGGTCAAGTTCAGCAAACCGCAGGTGAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGTCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGCTCAAATCTCCTAATCGACGATAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCCAGCCCTTTTGACCCGAATAATCGTGTTCCCCTGACTAGCCGTGTAGTGACTCTATGGTACCGACCACCCGAGCTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGCTGCATACTAGCTGAGCTATATTCTGGGAAGCCCATCTTACCTGGAAAAACTGAGGTCGAACAGCTGCATAAGATATTTAAACTTTGTGGATCGCCACCTGAGGATTATTGGAGGCAATTGCAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGATGTATCGTCGAAATGCTCAAGGAATTCCCCCCTGCTGCGGTCGCTCTCGTCGATAAGTTTCTTTCTATCGATCCTGCTCATCGAGGAACTGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTATGTCGAATCCTCTCCCTTGCGAACCTTCGAATTTGCCAAAATATCCTCCCAGCAAAGAGATCGATGCAAAAATCCACGTATGCAAAAGGCAATCACGAATTGAGGGCAAAGGTCCTAAGGATTTGGTGGAAGGCAGACGATCTAAAGAAGCACATACAAATCTTGCTCTAAATGTCAAGGATGAAGCTAACACGACAAGGCAAGGATGTTCAAGTTTAAAGGGACAGTGTGGAGTGTTCAATCCACACGGGGATCAAACAGATTCTGGTTTTTTTATTCCTCCACCCAAACAAAACCAATATGTCACAGAATCTTGCTCAGATACAGGCAGAATTTCACATTCAGGGCCGCTAGTTAGCAAACCAGATTGGATGAAATCTGGAAATCAACTCGATGACCATTCAATCGCGCTCGACAGATCCAATCGCTCGATGTTATCCCATTTAGTCGCATCAAGATCTAATACATCCGATCATCCCTATGATCGACCTGGCCTGTCACACTCAGAAGTAGGCAGATTCCCTGACTTTGTTAGGGAGTCAAAGTCAACGAGAACTAAGGATCAAATATTTTATACAAATCGAGTTGCAGATTCATACCGAATCGAAAATGGAAAAACTTGTTCTAAAGAACAGTCCCTGCCCCTGTTTGCTCATGGGACAGACATGAACAAGCTTTACACTTCTGGTCCAATCCTTGGCCCATCAAATGACTTAGATGATATAATGAAGGTTCGTGACCGTCAAATTCAAGAATACGCTCGACAAGCACGGCACGGTAAAGCTGGTAATAGTCAGTCGAAGTTTGCAAGAACAACAATTGGAAATCATCTCATGTCAAGCCACGACATGTGA 2073 44.86 MGCHYSKLSVEEEDMRLNSLKRAEGVRQNASMRADRVKTDGSVFKVAYYDKKANGSNRVYDDQIERKKRERLEAAISANYPGKWSIPKAVEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIINGKLVALKRVRFDNLDAESVKFMAREILILRRLDHPNVIKLESLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSKPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPNNRVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPEDYWRQLQLPHSTGFKTAQPYRRCIVEMLKEFPPAAVALVDKFLSIDPAHRGTAAAALKSEFFMSNPLPCEPSNLPKYPPSKEIDAKIHVCKRQSRIEGKGPKDLVEGRRSKEAHTNLALNVKDEANTTRQGCSSLKGQCGVFNPHGDQTDSGFFIPPPKQNQYVTESCSDTGRISHSGPLVSKPDWMKSGNQLDDHSIALDRSNRSMLSHLVASRSNTSDHPYDRPGLSHSEVGRFPDFVRESKSTRTKDQIFYTNRVADSYRIENGKTCSKEQSLPLFAHGTDMNKLYTSGPILGPSNDLDDIMKVRDRQIQEYARQARHGKAGNSQSKFARTTIGNHLMSSHDM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1402308 1406051 - Sed0008054.1 Sed01g0174 699478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0174 690 MobiDBLite consensus disorder prediction 666 690 - -
Sed01g0174 690 CDD STKc_CDK9_like 122 406 - -
Sed01g0174 690 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0174 690 Gene3D Transferase(Phosphotransferase) domain 1 205 443 - -
Sed01g0174 690 FunFam probable serine/threonine-protein kinase At1g54610 205 444 - -
Sed01g0174 690 SMART serkin_6 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0174 690 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0174 690 SUPERFAMILY Protein kinase-like (PK-like) 117 413 IPR011009 -
Sed01g0174 690 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Sed01g0174 690 MobiDBLite consensus disorder prediction 661 690 - -
Sed01g0174 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0174 690 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Sed01g0174 690 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Sed01g0174 690 PANTHER CELL DIVISION PROTEIN KINASE 121 406 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0174 Sed-Chr1:1402308 Sed05g3160 Sed-Chr5:41569146 0.00E+00 dispersed
Sed01g0174 Sed-Chr1:1402308 Sed01g0175 Sed-Chr1:1402308 0.00E+00 tandem
Sed01g0174 Sed-Chr1:1402308 Sed05g3158 Sed-Chr5:41561967 1.50E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78542 PF00069 Pkinase 1.60E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0174 - - - 0.0