Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0174 | ATGGGTTGCCATTATTCGAAGCTATCTGTTGAAGAAGAGGATATGCGATTGAATTCTCTGAAACGAGCTGAAGGTGTTCGACAAAATGCCTCAATGAGAGCAGATAGGGTGAAAACAGATGGAAGTGTCTTCAAAGTTGCATATTATGATAAGAAAGCCAATGGGTCAAACAGGGTATATGATGATCAAATTGAGAGAAAGAAGAGGGAGAGATTGGAAGCAGCCATTTCTGCTAATTATCCTGGAAAATGGAGTATTCCAAAGGCTGTGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCGAGCTGGCTCTCGTCTGTGGCTGGGGAAGCGCTCGAGGGATGGCTGCCTCGAAAAGCCGAAACATTCGAGAAACTAGACAAGATAGGACAAGGGACATATAGTAGTGTTTACAAGGCTCGTGATATCATTAACGGTAAACTAGTCGCTCTTAAACGAGTTCGATTCGACAATCTTGATGCAGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGGCTGGATCATCCAAATGTTATCAAATTGGAAAGCTTGATTACGTCTCCGCGTTCATGTAGCTTGTACCTCGTCTTTGAGTACATGGAGCATGATCTTACTGGGCTTGCATCTCGGCCTGGGGTCAAGTTCAGCAAACCGCAGGTGAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGTCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGCTCAAATCTCCTAATCGACGATAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCCAGCCCTTTTGACCCGAATAATCGTGTTCCCCTGACTAGCCGTGTAGTGACTCTATGGTACCGACCACCCGAGCTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGCTGCATACTAGCTGAGCTATATTCTGGGAAGCCCATCTTACCTGGAAAAACTGAGGTCGAACAGCTGCATAAGATATTTAAACTTTGTGGATCGCCACCTGAGGATTATTGGAGGCAATTGCAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGATGTATCGTCGAAATGCTCAAGGAATTCCCCCCTGCTGCGGTCGCTCTCGTCGATAAGTTTCTTTCTATCGATCCTGCTCATCGAGGAACTGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTATGTCGAATCCTCTCCCTTGCGAACCTTCGAATTTGCCAAAATATCCTCCCAGCAAAGAGATCGATGCAAAAATCCACGTATGCAAAAGGCAATCACGAATTGAGGGCAAAGGTCCTAAGGATTTGGTGGAAGGCAGACGATCTAAAGAAGCACATACAAATCTTGCTCTAAATGTCAAGGATGAAGCTAACACGACAAGGCAAGGATGTTCAAGTTTAAAGGGACAGTGTGGAGTGTTCAATCCACACGGGGATCAAACAGATTCTGGTTTTTTTATTCCTCCACCCAAACAAAACCAATATGTCACAGAATCTTGCTCAGATACAGGCAGAATTTCACATTCAGGGCCGCTAGTTAGCAAACCAGATTGGATGAAATCTGGAAATCAACTCGATGACCATTCAATCGCGCTCGACAGATCCAATCGCTCGATGTTATCCCATTTAGTCGCATCAAGATCTAATACATCCGATCATCCCTATGATCGACCTGGCCTGTCACACTCAGAAGTAGGCAGATTCCCTGACTTTGTTAGGGAGTCAAAGTCAACGAGAACTAAGGATCAAATATTTTATACAAATCGAGTTGCAGATTCATACCGAATCGAAAATGGAAAAACTTGTTCTAAAGAACAGTCCCTGCCCCTGTTTGCTCATGGGACAGACATGAACAAGCTTTACACTTCTGGTCCAATCCTTGGCCCATCAAATGACTTAGATGATATAATGAAGGTTCGTGACCGTCAAATTCAAGAATACGCTCGACAAGCACGGCACGGTAAAGCTGGTAATAGTCAGTCGAAGTTTGCAAGAACAACAATTGGAAATCATCTCATGTCAAGCCACGACATGTGA | 2073 | 44.86 | MGCHYSKLSVEEEDMRLNSLKRAEGVRQNASMRADRVKTDGSVFKVAYYDKKANGSNRVYDDQIERKKRERLEAAISANYPGKWSIPKAVEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIINGKLVALKRVRFDNLDAESVKFMAREILILRRLDHPNVIKLESLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSKPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPNNRVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPEDYWRQLQLPHSTGFKTAQPYRRCIVEMLKEFPPAAVALVDKFLSIDPAHRGTAAAALKSEFFMSNPLPCEPSNLPKYPPSKEIDAKIHVCKRQSRIEGKGPKDLVEGRRSKEAHTNLALNVKDEANTTRQGCSSLKGQCGVFNPHGDQTDSGFFIPPPKQNQYVTESCSDTGRISHSGPLVSKPDWMKSGNQLDDHSIALDRSNRSMLSHLVASRSNTSDHPYDRPGLSHSEVGRFPDFVRESKSTRTKDQIFYTNRVADSYRIENGKTCSKEQSLPLFAHGTDMNKLYTSGPILGPSNDLDDIMKVRDRQIQEYARQARHGKAGNSQSKFARTTIGNHLMSSHDM | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1402308 | 1406051 | - | Sed0008054.1 | Sed01g0174 | 699478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0174 | 690 | MobiDBLite | consensus disorder prediction | 666 | 690 | - | - | |
Sed01g0174 | 690 | CDD | STKc_CDK9_like | 122 | 406 | - | - | |
Sed01g0174 | 690 | Pfam | Protein kinase domain | 122 | 406 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0174 | 690 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 443 | - | - | |
Sed01g0174 | 690 | FunFam | probable serine/threonine-protein kinase At1g54610 | 205 | 444 | - | - | |
Sed01g0174 | 690 | SMART | serkin_6 | 122 | 406 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0174 | 690 | ProSiteProfiles | Protein kinase domain profile. | 122 | 406 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0174 | 690 | SUPERFAMILY | Protein kinase-like (PK-like) | 117 | 413 | IPR011009 | - | |
Sed01g0174 | 690 | FunFam | probable serine/threonine-protein kinase At1g54610 | 109 | 204 | - | - | |
Sed01g0174 | 690 | MobiDBLite | consensus disorder prediction | 661 | 690 | - | - | |
Sed01g0174 | 690 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 242 | 254 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0174 | 690 | Gene3D | Phosphorylase Kinase; domain 1 | 109 | 204 | - | - | |
Sed01g0174 | 690 | ProSitePatterns | Protein kinases ATP-binding region signature. | 128 | 151 | IPR017441 | GO:0005524(InterPro) | |
Sed01g0174 | 690 | PANTHER | CELL DIVISION PROTEIN KINASE | 121 | 406 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0174 | Sed-Chr1:1402308 | Sed05g3160 | Sed-Chr5:41569146 | 0.00E+00 | dispersed | |
Sed01g0174 | Sed-Chr1:1402308 | Sed01g0175 | Sed-Chr1:1402308 | 0.00E+00 | tandem | |
Sed01g0174 | Sed-Chr1:1402308 | Sed05g3158 | Sed-Chr5:41561967 | 1.50E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78542 | PF00069 | Pkinase | 1.60E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0174 | - | - | - | 0.0 |