Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0175 ATGGCCCGGGAAATCCTTATCCTACGTAGGCTGGATCATCCAAATGTTATCAAATTGGAAAGCTTGATTACGTCTCCGCGTTCATGTAGCTTGTACCTCGTCTTTGAGTACATGGAGCATGATCTTACTGGGCTTGCATCTCGGCCTGGGGTCAAGTTCAGCAAACCGCAGGTGAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGTCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGCTCAAATCTCCTAATCGACGATAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCCAGCCCTTTTGACCCGAATAATCGTGTTCCCCTGACTAGCCGTGTAGTGACTCTATGGTACCGACCACCCGAGCTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGCTGCATACTAGCTGAGCTATATTCTGGGAAGCCCATCTTACCTGGAAAAACTGAGGTCGAACAGCTGCATAAGATATTTAAACTTTGTGGATCGCCACCTGAGGATTATTGGAGGCAATTGCAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGATGTATCGTCGAAATGCTCAAGGAATTCCCCCCTGCTGCGGTCGCTCTCGTCGATAAGTTTCTTTCTATCGATCCTGCTCATCGAGGAACTGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTATGTCGAATCCTCTCCCTTGCGAACCTTCGAATTTGCCAAAATATCCTCCCAGCAAAGAGATCGATGCAAAAATCCACGTATGCAAAAGGCAATCACGAATTGAGGGCAAAGGTCCTAAGGATTTGGTGGAAGGCAGACGATCTAAAGAAGCACATACAAATCTTGCTCTAAATGTCAAGGATGAAGCTAACACGACAAGGCAAGGATGTTCAAGTTTAAAGGGACAGTGTGGAGTGTTCAATCCACACGGGGATCAAACAGATTCTGGTTTTTTTATTCCTCCACCCAAACAAAACCAATATGTCACAGAATCTTGCTCAGATACAGGCAGAATTTCACATTCAGGGCCGCTAGTTAGCAAACCAGATTGGATGAAATCTGGAAATCAACTCGATGACCATTCAATCGCGCTCGACAGATCCAATCGCTCGATGTTATCCCATTTAGTCGCATCAAGATCTAATACATCCGATCATCCCTATGATCGACCTGGCCTGTCACACTCAGAAGTAGGCAGATTCCCTGACTTTGTTAGGGAGTCAAAGTCAACGAGAACTAAGGATCAAATATTTTATACAAATCGAGTTGCAGATTCATACCGAATCGAAAATGGAAAAACTTGTTCTAAAGAACAGTCCCTGCCCCTGTTTGCTCATGGGACAGACATGAACAAGCTTTACACTTCTGGTCCAATCCTTGGCCCATCAAATGACTTAGATGATATAATGAAGGTTCGTGACCGTCAAATTCAAGAATACGCTCGACAAGCACGGCACGGTAAAGCTGGTAATAGTCAGTCGAAGTTTGCAAGAACAACAATTGGAAATCATCTCATGTCAAGCCACGACATGTGA 1578 45.12 MAREILILRRLDHPNVIKLESLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSKPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPNNRVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPEDYWRQLQLPHSTGFKTAQPYRRCIVEMLKEFPPAAVALVDKFLSIDPAHRGTAAAALKSEFFMSNPLPCEPSNLPKYPPSKEIDAKIHVCKRQSRIEGKGPKDLVEGRRSKEAHTNLALNVKDEANTTRQGCSSLKGQCGVFNPHGDQTDSGFFIPPPKQNQYVTESCSDTGRISHSGPLVSKPDWMKSGNQLDDHSIALDRSNRSMLSHLVASRSNTSDHPYDRPGLSHSEVGRFPDFVRESKSTRTKDQIFYTNRVADSYRIENGKTCSKEQSLPLFAHGTDMNKLYTSGPILGPSNDLDDIMKVRDRQIQEYARQARHGKAGNSQSKFARTTIGNHLMSSHDM 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1402308 1405265 - Sed0008054.2 Sed01g0175 699479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0175 525 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0175 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0175 525 Gene3D Transferase(Phosphotransferase) domain 1 40 278 - -
Sed01g0175 525 PANTHER CELL DIVISION PROTEIN KINASE 1 241 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed01g0175 525 SUPERFAMILY Protein kinase-like (PK-like) 2 248 IPR011009 -
Sed01g0175 525 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Sed01g0175 525 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0175 525 MobiDBLite consensus disorder prediction 501 525 - -
Sed01g0175 525 FunFam probable serine/threonine-protein kinase At1g54610 40 279 - -
Sed01g0175 525 SMART serkin_6 1 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0175 525 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0175 Sed-Chr1:1402308 Sed05g3160 Sed-Chr5:41569146 2.70E-250 dispersed
Sed01g0174 Sed-Chr1:1402308 Sed01g0175 Sed-Chr1:1402308 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78543 PF00069 Pkinase 2.00E-55 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0175 - - - 0.0