Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0193 ATGGAAGACGGTGAGCTTGAATCCTCGAATCCGGAAGTGTTTTCGGGTTCGAATGCCGTTGAGCTTCCAACCAGTTGCTCGATGGAGAGTTTCTTTGATGAAATTCTGAAGGATACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCTCATACACACACCTGTTTTCATGTTCATACTAAAATTGTATCCTCCCCCATGGAAGAAAAGGTTTCGACCGATGACACAGCGGACTCTGTGGATAAAAAGACTAAGAAACGTCCGATAGGTAATCGTGAAGCGGTACGTAAATACCGCGAGAAGAAAAAGGCAAGAGCTGCATCATTGGAAGATGAAGTTGTGAGGTTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATCCGGGGAAGAATTGAAGGGGAGATTGGATCATTTCCATATCAGACACCAGCCAATTCGAATCTTCCCAATCAAAATGTGTCTGGTAGTTACATGATAAATCCATGTAATGTGCAGTGCACTGATCAGGCATATTGCTTTCATCCAGGGGACGGTGGAAAAAGCGGAGAGAGCGTTCTGTTGAATGGGCAAAGTTTTAGTGGGTGCGACTTTGAAAATCTTCAGTGCTTTGCAAATCATAATGCAGGAGCGCAGGAGCTTCCTGACTGTGGATTAGGGGACACAATTTCTAACATCAATTGCTCAGAGTTGAATCAAAAGAAAGGTGTATATGAAAGATTCTGTCCAAGTTATGTGTTATAA 819 43.96 MEDGELESSNPEVFSGSNAVELPTSCSMESFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPMEEKVSTDDTADSVDKKTKKRPIGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGSFPYQTPANSNLPNQNVSGSYMINPCNVQCTDQAYCFHPGDGGKSGESVLLNGQSFSGCDFENLQCFANHNAGAQELPDCGLGDTISNINCSELNQKKGVYERFCPSYVL 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1506269 1509995 - Sed0000125.3 Sed01g0193 699497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0193 272 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0193 272 Gene3D - 76 153 - -
Sed01g0193 272 MobiDBLite consensus disorder prediction 77 96 - -
Sed01g0193 272 Coils Coil 98 132 - -
Sed01g0193 272 SMART brlzneu 85 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0193 272 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0193 272 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 180 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Sed01g0193 272 MobiDBLite consensus disorder prediction 73 96 - -
Sed01g0193 272 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0193 272 CDD bZIP 90 144 - -
Sed01g0193 272 FunFam Basic leucine zipper 24 75 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0193 Sed-Chr1:1506269 Sed05g3492 Sed-Chr5:43687714 1.30E-102 dispersed
Sed01g0192 Sed-Chr1:1506269 Sed01g0193 Sed-Chr1:1506269 4.50E-140 tandem
Sed01g0193 Sed-Chr1:1506269 Sed01g0194 Sed-Chr1:1506269 9.10E-133 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37090 PF07716 bZIP_2 1.60E-15 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0193 K25785 - csv:101219501 482.641